RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 KDSRQ06136 332 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 PDXDC2PQ6P474 469 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 THAP11Q96EK4 314 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 KCNK16Q96T55 309 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 TMEM161AQ9NX61 479 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 BCS1LQ9Y276 419 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 PCDHB6Q9Y5E3 794 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 CAPZA2P47755 286 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 KCNB1Q14721 858 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 TBC1D19Q8N5T2 526 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 URGCPQ8TCY9 931 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 PLEKHA8Q96JA3 519 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 CNOT8Q9UFF9 292 aaKnown RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 DNAJC12Q9UKB3 198 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 STAP1Q9ULZ2 295 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 LDHAP00338 332 aaKnown RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 NUMA1Q14980 2115 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 TRIP4Q15650 581 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 RFFLQ8WZ73 363 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 TMEM245Q9H330 911 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 CCDC134Q9H6E4 229 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 ZFATQ9P243 1243 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 ADAMTS1Q9UHI8 967 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 FAM32AQ9Y421 112 aaKnown RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 AKAP10O43572 662 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 FAM107AO95990 144 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 BRAFP15056 766 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 LVRNQ6Q4G3 990 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 ACAP3Q96P50 834 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 MRPS26Q9BYN8 205 aaKnown RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 NSMCE4AQ9NXX6 385 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 STMN3Q9NZ72 180 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 HSPBP1Q9NZL4 362 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 SLC9A2Q9UBY0 812 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 ESYT3A0FGR9 886 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 TOMM70O94826 608 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 GPC3P51654 580 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 GOLPH3LQ9H4A5 285 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 FBXL5Q9UKA1 691 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 PCDHGB4Q9UN71 923 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 BMP3P12645 472 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 PRAMEP78395 509 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 UBE2SQ16763 222 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ANKRD40Q6AI12 368 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ARHGAP27Q6ZUM4 889 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 OPTNQ96CV9 577 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 NCKAP5LQ9HCH0 1330 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ANKARQ7Z5J8 1434 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 HUS1O60921 280 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 RALBP11234 206 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CRKLP46109 303 aaKnown RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 NME3Q13232 169 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 PKN3Q6P5Z2 889 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 EME1Q96AY2 570 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ASIC4Q96FT7 647 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 SNX12Q9UMY4 172 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 DLGAP3O95886 979 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CCDC103Q8IW40 242 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 GIMAP8Q8ND71 665 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 SPATA4Q8NEY3 305 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 TRABDQ9H4I3 376 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CDYLQ9Y232 598 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ZNF608Q9ULD9 1512 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 IQGAP3Q86VI3 1631 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CLRN2A0PK11 232 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ATP10AO60312 1499 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 SLC1A1P43005 524 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 PRUNE1Q86TP1 453 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 TMEM35BQ8NCS4 154 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ARHGEF40Q8TER5 1519 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CEP95Q96GE4 821 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 FAM167AQ96KS9 214 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ROPN1BQ9BZX4 212 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 ROPN1Q9HAT0 212 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 HDAC6Q9UBN7 1215 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 PREX2Q70Z35 1606 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 SLC10A5Q5PT55 438 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CATSPER4Q7RTX7 472 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 GUF1Q8N442 669 aaKnown RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 OR6P1Q8NGX9 317 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 SH3TC2Q8TF17 1288 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 TMA16Q96EY4 203 aaKnown RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 OSBPL10Q9BXB5 764 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 NPHS2Q9NP85 383 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 LEMD3Q9Y2U8 911 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 MTO1Q9Y2Z2 717 aaKnown RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CHD4Q14839 1912 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 IREB2P48200 963 aaKnown RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 EEPD1Q7L9B9 569 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 RASGRP2Q7LDG7 609 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 LONP2Q86WA8 852 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 CDR2LQ86X02 465 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 LCORLQ8N3X6 602 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 PPP1R2P1Q96PQ5 205 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 DHX36Q9H2U1 1008 aaKnown RBP7.7□□□□□ -1.18
SYNE1-208ENST00000367256 GREM2Q9H772 168 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 RSPH10B2B2RC85 870 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 K7ERI5 159 aa7.7□□□□□ -1.18
SYNE1-208ENST00000367256 NCK2O43639 380 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms