RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PGBD4Q96DM1 585 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 FAM213AQ9BRX8 229 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 MTIF3Q9H2K0 278 aaKnown RBP24.17■■□□□ 1.46
SDC3-202ENST00000339394 GOLGA8IPA6NC78 632 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 GOLGA8JA6NMD2 632 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 EXTL3O43909 919 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 UPP2O95045 317 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 LDHAP00338 332 aaKnown RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 ITGA4P13612 1032 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 ADAM9Q13443 819 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 CRELD2Q6UXH1 353 aaPredicted RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 AGMOQ6ZNB7 445 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 TMCO2Q7Z6W1 182 aaPredicted RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 NPAS4Q8IUM7 802 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 HACE1Q8IYU2 909 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 GPD1LQ8N335 351 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 FBXL18Q96ME1 805 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 DUSP9Q99956 384 aaKnown RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 CPSF3Q9UKF6 684 aaKnown RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 LRFN2Q9ULH4 789 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 SLC4A7Q9Y6M7 1214 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 EXOC3O60645 756 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 CLTAP09496 248 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 RPL13P26373 211 aaKnown RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 BMP8BP34820 402 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 FKBP3Q00688 224 aaKnown RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 KYAT1Q16773 422 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 RDH13Q8NBN7 331 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 NOC3LQ8WTT2 800 aaKnown RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 ACAP3Q96P50 834 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 CCDC94Q9BW85 323 aaPredicted RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 RNF216Q9NWF9 866 aaPredicted RBP24.16■■□□□ 1.46
SDC3-202ENST00000339394 PARP2Q9UGN5 583 aa24.16■■□□□ 1.46
SDC3-202ENST00000339394 RECQL4O94761 1208 aa24.15■■□□□ 1.46
SDC3-202ENST00000339394 CBWD2Q8IUF1 395 aa24.15■■□□□ 1.46
SDC3-202ENST00000339394 RNPC3Q96LT9 517 aaKnown RBP24.15■■□□□ 1.46
SDC3-202ENST00000339394 KIAA1586Q9HCI6 787 aa24.15■■□□□ 1.46
SDC3-202ENST00000339394 PDE4DIPQ5VU43 2346 aa24.14■■□□□ 1.46
SDC3-202ENST00000339394 FGFR1P11362 822 aa24.14■■□□□ 1.45
SDC3-202ENST00000339394 CASP4P49662 377 aa24.14■■□□□ 1.45
SDC3-202ENST00000339394 SNRNP35Q16560 246 aaKnown RBP24.14■■□□□ 1.45
SDC3-202ENST00000339394 ZC3H3Q8IXZ2 948 aaKnown RBP24.14■■□□□ 1.45
SDC3-202ENST00000339394 CSGALNACT2Q8N6G5 542 aa24.14■■□□□ 1.45
SDC3-202ENST00000339394 RSAD1Q9HA92 442 aa24.14■■□□□ 1.45
SDC3-202ENST00000339394 UBN1Q9NPG3 1134 aa24.14■■□□□ 1.45
SDC3-202ENST00000339394 GIT1Q9Y2X7 761 aa24.14■■□□□ 1.45
SDC3-202ENST00000339394 CETN3O15182 167 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 MEFVO15553 781 aaPredicted RBP24.13■■□□□ 1.45
SDC3-202ENST00000339394 AKAP3O75969 853 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 CXCL8P10145 99 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 ENOX2Q16206 610 aaKnown RBP24.13■■□□□ 1.45
SDC3-202ENST00000339394 SLC10A6Q3KNW5 377 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 CEP135Q66GS9 1140 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 FAM117BQ6P1L5 589 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 LRRC55Q6ZSA7 311 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 PHOSPHO2Q8TCD6 241 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 NAT10Q9H0A0 1025 aaKnown RBP24.13■■□□□ 1.45
SDC3-202ENST00000339394 RPF1Q9H9Y2 349 aaKnown RBP24.13■■□□□ 1.45
SDC3-202ENST00000339394 RNF19AQ9NV58 838 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 KLK14Q9P0G3 267 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 FRMD4BQ9Y2L6 1034 aa24.13■■□□□ 1.45
SDC3-202ENST00000339394 ZNF233A6NK53 670 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 ATP2A2P16615 1042 aaKnown RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 AFF1P51825 1210 aaKnown RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 YARSP54577 528 aaKnown RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 CLLU1OSQ5K130 101 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 LRSAM1Q6UWE0 723 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 ZFP42Q96MM3 310 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 SLC9A7Q96T83 725 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 CXCL16Q9H2A7 254 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 TOPORSQ9NS56 1045 aaPredicted RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 RBAKQ9NYW8 714 aaPredicted RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 OFD1O75665 1012 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 MLH1P40692 756 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 POU5F1Q01860 360 aaKnown RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 ALKAL1Q6UXT8 129 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 CHRDL2Q6WN34 429 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 ENOX1Q8TC92 643 aaKnown RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 HELQQ8TDG4 1101 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 GAD1Q99259 594 aa24.12■■□□□ 1.45
SDC3-202ENST00000339394 SRRTQ9BXP5 876 aaKnown RBP24.12■■□□□ 1.45
SDC3-202ENST00000339394 ARL5CA6NH57 179 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 DGKIO75912 1065 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 GJB5O95377 273 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 ZNF445P59923 1031 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 GLB1LQ6UWU2 654 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 GSTCDQ8NEC7 633 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 SNX27Q96L92 541 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 CEP63Q96MT8 703 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 PRO3102Q9H379 93 aa24.11■■□□□ 1.45
SDC3-202ENST00000339394 MICAL3Q7RTP6 2002 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 TTC26A0AVF1 554 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 HOXA2O43364 376 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 ADRB2P07550 413 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 PSMC2P35998 433 aaKnown RBP24.1■■□□□ 1.45
SDC3-202ENST00000339394 ZNF165P49910 485 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 GATMP50440 423 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 HSP90AA2PQ14568 343 aaPredicted RBP24.1■■□□□ 1.45
SDC3-202ENST00000339394 HERC6Q8IVU3 1022 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 BRSK2Q8IWQ3 736 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms