RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 INPP5FQ9Y2H2 1132 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 DIS3Q9Y2L1 958 aaKnown RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 CYP2D7A0A087X1C5 515 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 LAD1O00515 517 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 SFNP31947 248 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 CARSP49589 748 aaKnown RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 FKBP3Q00688 224 aaKnown RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 CACNB1Q02641 598 aaPredicted RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 CYP4A11Q02928 519 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 CCDC15Q0P6D6 951 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 CCDC85BQ15834 202 aaPredicted RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 PDIK1LQ8N165 341 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 OSBPL9Q96SU4 736 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 CALN1Q9BXU9 219 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 MRPL47Q9HD33 250 aaKnown RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 RHBDL2Q9NX52 303 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 RARS2Q5T160 578 aaKnown RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 C16orf86Q6ZW13 317 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 ACAD11Q709F0 780 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 RTFDC1Q9BY42 306 aaPredicted RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 FAM49AQ9H0Q0 323 aaPredicted RBP8.69□□□□□ -1.02
VPS41-202ENST00000310301 NDST4Q9H3R1 872 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 GIMAP4Q9NUV9 329 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 TBC1D23Q9NUY8 699 aa8.69□□□□□ -1.02
VPS41-202ENST00000310301 PARP4Q9UKK3 1724 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 LRRIQ4A6NIV6 560 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 SORBS3O60504 671 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 KRT37O76014 449 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 STAG3L1P0CL83 205 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 BRAFP15056 766 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 NR1H3Q13133 447 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 MTMR1Q13613 665 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 IER5Q5VY09 327 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 NECAB2Q7Z6G3 386 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 CTU1Q7Z7A3 348 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 TEX2Q8IWB9 1127 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 ELMOD1Q8N336 334 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 MRPL40Q9NQ50 206 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 ADA2Q9NZK5 511 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 HDAC6Q9UBN7 1215 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 ATP11BQ9Y2G3 1177 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 ZNF541Q9H0D2 1346 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 HLA-DPA1P20036 260 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 RCAN1P53805 252 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 HERVK_113P62684 666 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 MRPL28Q13084 256 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 LAMC2Q13753 1193 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 HABP4Q5JVS0 413 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 CATSPER4Q7RTX7 472 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 LONP2Q86WA8 852 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 CATSPER3Q86XQ3 398 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 RYBPQ8N488 228 aaPredicted RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 SLAIN1Q8ND83 568 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 DTX3LQ8TDB6 740 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 COG1Q8WTW3 980 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 SNRNP27Q8WVK2 155 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 INO80B-WBP1J3KQ70 363 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 STK25O00506 426 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 DEAF1O75398 565 aaPredicted RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 SEC24DO94855 1032 aaPredicted RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 LARGE1O95461 756 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 CCNE1P24864 410 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 NFRKBQ6P4R8 1299 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 ANKRD23Q86SG2 305 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 TRPM4Q8TD43 1214 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 MTMR4Q9NYA4 1195 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 ADAMTS1Q9UHI8 967 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 COL16A1Q07092 1604 aaPredicted RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 ANO9A1A5B4 782 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 PI4K2BG5E9Z4 385 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 NDUFB10O96000 172 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 AP1B1Q10567 949 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 DNAJC24Q6P3W2 148 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 ALKBH5Q6P6C2 394 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 TMCO5AQ8N6Q1 288 aa8.68□□□□□ -1.02
VPS41-202ENST00000310301 PRMT1Q99873 361 aaKnown RBP8.68□□□□□ -1.02
VPS41-202ENST00000310301 NCK2O43639 380 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 CHEK2O96017 543 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 AKR1A1P14550 325 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 MDH1P40925 334 aaKnown RBP8.67□□□□□ -1.02
VPS41-202ENST00000310301 TRAPPC10P48553 1259 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 APOA5Q6Q788 366 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 BTBD6Q96KE9 485 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 CEP170P1Q96L14 293 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 AK8Q96MA6 479 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 KIAA1683Q9H0B3 1180 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 MAP3K20Q9NYL2 800 aaKnown RBP8.67□□□□□ -1.02
VPS41-202ENST00000310301 TRIM33Q9UPN9 1127 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 CARNS1A5YM72 827 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 WDR64B1ANS9 1081 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 SERPINB3P29508 390 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 PGM1P36871 562 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 CYLC2Q14093 348 aaPredicted RBP8.67□□□□□ -1.02
VPS41-202ENST00000310301 DGKDQ16760 1214 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 BZW1Q7L1Q6 419 aaKnown RBP8.67□□□□□ -1.02
VPS41-202ENST00000310301 FAM163AQ96GL9 167 aaPredicted RBP8.67□□□□□ -1.02
VPS41-202ENST00000310301 SH3GL2Q99962 352 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 PCIF1Q9H4Z3 704 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 FAM96AQ9H5X1 160 aa8.67□□□□□ -1.02
VPS41-202ENST00000310301 PCDHA4Q9UN74 947 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms