RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 EHD2Q9NZN4 543 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 NPHP3-ACAD11A0A0J9YXS1 232 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 HNRNPCP07910 306 aaKnown RBP eCLIP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 SFNP31947 248 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 YWHAHQ04917 246 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 LXNQ9BS40 222 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 CELF4Q9BZC1 486 aaKnown RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 RAB21Q9UL25 225 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 TFR2Q9UP52 801 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 ZHX2Q9Y6X8 837 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 ALDH18A1P54886 795 aaKnown RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 PSMC1P62191 440 aaKnown RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 SLC29A2Q14542 456 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 BARGINQ6ZT62 677 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 ANKMY2Q8IV38 441 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 ALG13Q9NP73 1137 aaKnown RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 PCSK1NQ9UHG2 260 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 NEU2Q9Y3R4 380 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 ARAP3Q8WWN8 1544 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 SRGAP2CP0DJJ0 459 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 PAPOLAP51003 745 aaKnown RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 TMEM259Q4ZIN3 620 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 GPD1LQ8N335 351 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 RYBPQ8N488 228 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 SKA2Q8WVK7 121 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-201ENST00000304636 RAPGEF5Q92565 580 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 SERPINB12Q96P63 405 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 GH2P01242 217 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 SCTRP47872 440 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 BCAR1P56945 870 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 MAPRE2Q15555 327 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 CNGA3Q16281 694 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 HEATR6Q6AI08 1181 aaKnown RBP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 GADL1Q6ZQY3 521 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 ARL8AQ96BM9 186 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 SLC12A6Q9UHW9 1150 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 PABPC3Q9H361 631 aaKnown RBP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 ABCB11O95342 1321 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 SDC4P31431 198 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 AP1B1Q10567 949 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 SBK1Q52WX2 424 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 FIGNQ5HY92 759 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 LRRC34Q8IZ02 419 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 CAVIN3Q969G5 261 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 C9orf72Q96LT7 481 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 KDM4CQ9H3R0 1056 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 NBPF26B4DH59 902 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 DNAJC6O75061 913 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 TYK2P29597 1187 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 NMT1P30419 496 aaKnown RBP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 VHLP40337 213 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 EPHA7Q15375 998 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 METTL23Q86XA0 190 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 C4orf33Q8N1A6 199 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 NBPF15Q8N660 670 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 MDM1Q8TC05 714 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 ZBTB18Q99592 522 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 SENP2Q9HC62 589 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 NPHP4O75161 1426 aaPredicted RBP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 NQO1P15559 274 aaKnown RBP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 CD44P16070 742 aaKnown RBP13.59□□□□□ -0.23
COL3A1-201ENST00000304636 OSBPP22059 807 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 HDAC4P56524 1084 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 CARD9Q9H257 536 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 USP21Q9UK80 565 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
COL3A1-201ENST00000304636 PLEKHG2Q9H7P9 1386 aa13.58□□□□□ -0.23
COL3A1-201ENST00000304636 SYCE1LA8MT33 242 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 SLC9A1P19634 815 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 PMLP29590 882 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 ARHGDIAP52565 204 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 KLHDC7AQ5VTJ3 777 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 HAUS6Q7Z4H7 955 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 THNSL1Q8IYQ7 743 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 hCG_2014768A0A024R1R8 64 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 GOLGA8RI6L899 631 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 PCYT1AP49585 367 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 AP3M2P53677 418 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 CCNYL1Q8N7R7 359 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 KCND1Q9NSA2 647 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 IRAK4Q9NWZ3 460 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 E9PCH4 1651 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 PIK3R2O00459 728 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 ACADSP16219 412 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 TRIM65Q6PJ69 517 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 FAM84BQ96KN1 310 aaPredicted RBP13.58□□□□□ -0.24
COL3A1-201ENST00000304636 ALG6Q9Y672 507 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 CNTNAP5Q8WYK1 1306 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 MAGEA4P43358 317 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 RFX5P48382 616 aaPredicted RBP13.58□□□□□ -0.24
COL3A1-201ENST00000304636 GPC3P51654 580 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 KYNUQ16719 465 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 TMTC4Q5T4D3 741 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 TPCN2Q8NHX9 752 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 FEM1BQ9UK73 627 aa13.58□□□□□ -0.24
COL3A1-201ENST00000304636 COMTP21964 271 aa13.57□□□□□ -0.24
COL3A1-201ENST00000304636 PSMC5P62195 406 aa13.57□□□□□ -0.24
COL3A1-201ENST00000304636 CENPCQ03188 943 aa13.57□□□□□ -0.24
COL3A1-201ENST00000304636 NSUN4Q96CB9 384 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms