RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 OPTNQ96CV9 577 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 ARHGEF26Q96DR7 871 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 L3MBTL3Q96JM7 780 aaPredicted RBP13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 FNBP1Q96RU3 617 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 KRT12Q99456 494 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.94□□□□□ -0.181e-6■■□□□ 13.1
SPTLC1-201ENST00000262554 TMEM134Q9H6X4 195 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 C1orf112Q9NSG2 853 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 TMEM59LQ9UK28 342 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 LDHAP00338 332 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 EPHX2P34913 555 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 PDE6CP51160 858 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 EPHB4P54760 987 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 GPC5P78333 572 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 MRPS25P82663 173 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 LY6KQ17RY6 165 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 SLC47A2Q86VL8 602 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 CCDC102AQ96A19 550 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 MMP19Q99542 508 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 HINFPQ9BQA5 517 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 TXNRD2Q9NNW7 524 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 MED4Q9NPJ6 270 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 RBPJLQ9UBG7 517 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 HPCAL4Q9UM19 191 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 DIS3Q9Y2L1 958 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 ZNFX1Q9P2E3 1918 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 MAFO75444 373 aaPredicted RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 HEXIM1O94992 359 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 PGK2P07205 417 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 ZBTB48P10074 688 aaPredicted RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 CYP11B1P15538 503 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 YBX3P16989 372 aaKnown RBP eCLIP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 CHRNB2P17787 502 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 TNNI1P19237 187 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 CLDN10P78369 228 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 GCNT1Q02742 428 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 TCEAL1Q15170 157 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 TAF3Q5VWG9 929 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 C15orf39Q6ZRI6 1047 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 RASGEF1CQ8N431 466 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 SCFD2Q8WU76 684 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 SYT17Q9BSW7 474 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 MSTO1Q9BUK6 570 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 ZCCHC17Q9NP64 241 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 CTTNBP2NLQ9P2B4 639 aa13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 NOC2LQ9Y3T9 749 aaKnown RBP13.93□□□□□ -0.18
SPTLC1-201ENST00000262554 CCDC188H7C350 402 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 NOP56O00567 594 aaKnown RBP13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 CDR2Q01850 454 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 MOGSQ13724 837 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 WDR44Q5JSH3 913 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 EMBQ6PCB8 327 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 EXOC8Q8IYI6 725 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 FAM71BQ8TC56 605 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 GLG1Q92896 1179 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 TATDN2Q93075 761 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 PCDHB18PQ96TA0 734 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 TARS2Q9BW92 718 aaKnown RBP13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 MROH8Q9H579 483 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 GDF3Q9NR23 364 aa13.92□□□□□ -0.18
SPTLC1-201ENST00000262554 DNAJC25-GNG10A0A024R161 153 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 SOCS7O14512 581 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 GAS2O43903 313 aaKnown RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ADCY3O60266 1144 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 GLI1P08151 1106 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 MMEP08473 750 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 KRT5P13647 590 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 AARSP49588 968 aaKnown RBP eCLIP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ACOT2P49753 483 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 EFNA5P52803 228 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 NLRP11P59045 1033 aaKnown RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 FMO1Q01740 532 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 GUCY2DQ02846 1103 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 CAPSQ13938 189 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 Q3C1V9 767 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ZACNQ401N2 412 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 CELF3Q5SZQ8 465 aaKnown RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 WDR78Q5VTH9 848 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 C11orf63Q6NUN7 778 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 SND1Q7KZF4 910 aaKnown RBP eCLIP13.91□□□□□ -0.187e-9■■■□□ 19.1
SPTLC1-201ENST00000262554 ZNF771Q7L3S4 317 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 KLHL7Q8IXQ5 586 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 UBE2Q2Q8WVN8 375 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 TCP11Q8WWU5 503 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ZNF516Q92618 1163 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 FGD4Q96M96 766 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 GDAP1L1Q96MZ0 367 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 GPR20Q99678 358 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 R3HDMLQ9H3Y0 253 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 EPB41L5Q9HCM4 733 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 RBAKQ9NYW8 714 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ANKFY1Q9P2R3 1169 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 COG5Q9UP83 839 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 FARP1Q9Y4F1 1045 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 MCM3APO60318 1980 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 A0A0B4J269 797 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 FAM170AA1A519 330 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 KRIT1O00522 736 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 LGR5O75473 907 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ARIH2O95376 493 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms