RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 EIF2AQ9BY44 585 aaKnown RBP19.85■□□□□ 0.77
CLN3-239ENST00000628023 PDZD7Q9H5P4 517 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 FRMD3A2A2Y4 597 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 TTLL13PA6NNM8 815 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 TBKBP1A7MCY6 615 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 DGKIO75912 1065 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 GCNT3O95395 438 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 EOMESO95936 686 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 EDN1P05305 212 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 KCNA5P22460 613 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 CASP1P29466 404 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 CTNNB1P35222 781 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 GATMP50440 423 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 FAM160A1Q05DH4 1040 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 CUL4BQ13620 913 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 LEXMQ3ZCV2 418 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 UBXN11Q5T124 520 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 NT5DC1Q5TFE4 455 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 KRBA2Q6ZNG9 492 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 LPPQ93052 612 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 GBP4Q96PP9 640 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 TARS2Q9BW92 718 aaKnown RBP19.84■□□□□ 0.77
CLN3-239ENST00000628023 APOL6Q9BWW8 343 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 ANKFY1Q9P2R3 1169 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 IPPQ9Y573 584 aa19.84■□□□□ 0.77
CLN3-239ENST00000628023 ZNF623O75123 536 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 ITGA4P13612 1032 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 ATF7P17544 494 aaPredicted RBP19.83■□□□□ 0.77
CLN3-239ENST00000628023 MATR3P43243 847 aaKnown RBP eCLIP19.83■□□□□ 0.77
CLN3-239ENST00000628023 PUS10Q3MIT2 529 aaKnown RBP19.83■□□□□ 0.77
CLN3-239ENST00000628023 DCAF4L1Q3SXM0 396 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 ZNF568Q3ZCX4 644 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 CNNM4Q6P4Q7 775 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 UNC13DQ70J99 1090 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 ZNF598Q86UK7 904 aaKnown RBP19.83■□□□□ 0.77
CLN3-239ENST00000628023 CRIPAKQ8N1N5 446 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 TCHPQ9BT92 498 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 C11orf84Q9BUA3 381 aaPredicted RBP19.83■□□□□ 0.77
CLN3-239ENST00000628023 OLFML3Q9NRN5 406 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 TBX20Q9UMR3 447 aa19.83■□□□□ 0.77
CLN3-239ENST00000628023 COL4A6Q14031 1691 aa19.83■□□□□ 0.76
CLN3-239ENST00000628023 HNRNPDLO14979 420 aaKnown RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 NCK2O43639 380 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 GADD45BO75293 160 aaPredicted RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 MYL1P05976 194 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 BMPR1AP36894 532 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 LIG4P49917 911 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 ZC2HC1CQ53FD0 456 aaPredicted RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 EEF1DP3Q658K8 133 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 KANK3Q6NY19 840 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 GLB1LQ6UWU2 654 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 STXBP4Q6ZWJ1 553 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 CMTR2Q8IYT2 770 aaKnown RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 FMR1NBQ8N0W7 255 aaPredicted RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 HELQQ8TDG4 1101 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 HVCN1Q96D96 273 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 FIZ1Q96SL8 496 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 ACO2Q99798 780 aaKnown RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 TMEM117Q9H0C3 514 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 NXF3Q9H4D5 531 aaKnown RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 NSUN3Q9H649 340 aaKnown RBP19.82■□□□□ 0.76
CLN3-239ENST00000628023 EXOC1Q9NV70 894 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 FAM50BQ9Y247 325 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 TNFSF13BQ9Y275 285 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 INPP5FQ9Y2H2 1132 aa19.82■□□□□ 0.76
CLN3-239ENST00000628023 C5orf67F2Z3F1 127 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 PRPF40AO75400 957 aaKnown RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 HARSP12081 509 aaKnown RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 UBE2HP62256 183 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 GTF2BQ00403 316 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 ALCAMQ13740 583 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 FAM26FQ5R3K3 315 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 SPOUT1Q5T280 376 aaKnown RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 EP400NLQ6ZTU2 488 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 ZNF720Q7Z2F6 126 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 ZBTB33Q86T24 672 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 SMG8Q8ND04 991 aaKnown RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 URGCPQ8TCY9 931 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 CCDC47Q96A33 483 aaKnown RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 ZNF689Q96CS4 500 aaPredicted RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 LMAN2LQ9H0V9 348 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 ST6GALNAC4Q9H4F1 302 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 RSAD1Q9HA92 442 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 RC3H2Q9HBD1 1191 aaKnown RBP19.81■□□□□ 0.76
CLN3-239ENST00000628023 PARP2Q9UGN5 583 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 HES2Q9Y543 173 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 PCDHB13Q9Y5F0 798 aa19.81■□□□□ 0.76
CLN3-239ENST00000628023 RALGAPA2Q2PPJ7 1873 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 NLRC5Q86WI3 1866 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 PVALEFA0A1B0GWK0 134 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 KINO60870 393 aaKnown RBP19.8■□□□□ 0.76
CLN3-239ENST00000628023 TOM1L1O75674 476 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 PRR29P0C7W0 189 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 MYBP10242 640 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 TCEAL5Q5H9L2 206 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 CLLU1OSQ5K130 101 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 PTCRAQ6ISU1 281 aaPredicted RBP19.8■□□□□ 0.76
CLN3-239ENST00000628023 MPZL3Q6UWV2 235 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 ZPBP2Q6X784 338 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 MRPL10Q7Z7H8 261 aaKnown RBP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms