RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TRIM72Q6ZMU5 477 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 SMIM24O75264 130 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 GABPB1Q06547 395 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 GLB1LQ6UWU2 654 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 SCYL3Q8IZE3 742 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 USP42Q9H9J4 1324 aaKnown RBP12.08□□□□□ -0.47
CLIP1-219ENST00000620786 CFLARO15519 480 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 RFC5P40937 340 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PRAMEP78395 509 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 SBK1Q52WX2 424 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 ZBTB41Q5SVQ8 909 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 RAB42Q8N4Z0 105 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 GBP5Q96PP8 586 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 SH2D3AQ9BRG2 576 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 C17orf102A2RUQ5 167 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 KIAA0391O15091 583 aaKnown RBP12.08□□□□□ -0.48
CLIP1-219ENST00000620786 FTLP02792 175 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-219ENST00000620786 SMARCA1P28370 1054 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PHEXP78562 749 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PRKCEQ02156 737 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PTK2BQ14289 1009 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 RBBP7Q16576 425 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 WDR72Q3MJ13 1102 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 THEMIS2Q5TEJ8 643 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 ANKRD40Q6AI12 368 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 EFHBQ8N7U6 833 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 SLC38A7Q9NVC3 462 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PARVAQ9NVD7 372 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 GTSE1Q9NYZ3 720 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 SUN2Q9UH99 717 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 CD163L1Q9NR16 1453 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PODXLO00592 558 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 COPEO14579 308 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 ANP32DO95626 131 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 TPI1P60174 286 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 GTF2H3Q13889 308 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 MGAT5BQ3V5L5 792 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 HSPBP1Q9NZL4 362 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 SH3BP1Q9Y3L3 701 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 APOL1O14791 398 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PRPF4O43172 522 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLIP1-219ENST00000620786 LBRQ14739 615 aaKnown RBP12.08□□□□□ -0.48
CLIP1-219ENST00000620786 EFCAB12Q6NXP0 572 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 STKLD1Q8NE28 680 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 GIPC2Q8TF65 315 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 RAPGEF5Q92565 580 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 NCLNQ969V3 563 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 DCUN1D1Q96GG9 259 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 VPS11Q9H270 941 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 PCDHB8Q9UN66 801 aa12.08□□□□□ -0.48
CLIP1-219ENST00000620786 ACOT2P49753 483 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 BCAR1P56945 870 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ZKSCAN4Q969J2 545 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 EPAS1Q99814 870 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ADARB2Q9NS39 739 aaKnown RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ABHD10Q9NUJ1 306 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 CD4P01730 458 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 CLTAP09496 248 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ZFXP17010 805 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 IFNA8P32881 189 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 EPHX2P34913 555 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 TAP1Q03518 808 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 KRT17Q04695 432 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 RABL6Q3YEC7 729 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 WHAMMQ8TF30 809 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ZNF512Q96ME7 567 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 KRT82Q9NSB4 513 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 TTC7AQ9ULT0 858 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 DOLKQ9UPQ8 538 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 CFAP69A5D8W1 941 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 GUCY1A2P33402 732 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ATP2C1P98194 919 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 POU5F1BQ06416 359 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 CUL1Q13616 776 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 SGMS1Q86VZ5 419 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 EFHD1Q9BUP0 239 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ERAP1Q9NZ08 941 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 NOVA2Q9UNW9 492 aaKnown RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 HSD17B4P51659 736 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 KCNA1Q09470 495 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 SV2CQ496J9 727 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 ATG4CQ96DT6 458 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 GLT1D1Q96MS3 346 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 MOV10L1Q9BXT6 1211 aaKnown RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 MUC3BQ9H195 1237 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 NEXMIFQ5QGS0 1516 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 PPP1R12AO14974 1030 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 PDGFRBP09619 1106 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 CDH6P55285 790 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 KDELC2Q7Z4H8 507 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 SMAP1Q8IYB5 467 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 DCP1BQ8IZD4 617 aaKnown RBP12.07□□□□□ -0.48
CLIP1-219ENST00000620786 AGBL1Q96MI9 1066 aa12.07□□□□□ -0.48
CLIP1-219ENST00000620786 SMAD1Q15797 465 aaKnown RBP12.06□□□□□ -0.48
CLIP1-219ENST00000620786 PLA2G4FQ68DD2 849 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 SDE2Q6IQ49 451 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 LRRC71Q8N4P6 559 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 SCFD2Q8WU76 684 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 TTC17Q96AE7 1141 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 CNOT10Q9H9A5 744 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms