RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TCP11Q8WWU5 503 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 CTNNBL1Q8WYA6 563 aaPredicted RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 THAP2Q9H0W7 228 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 ZMYM2Q9UBW7 1377 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 SMIM23A6NLE4 172 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 WDR64B1ANS9 1081 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 ZNF862O60290 1169 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 CNGA1P29973 690 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 ASTE1Q2TB18 679 aaPredicted RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 HIBCHQ6NVY1 386 aaPredicted RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 ARHGEF26Q96DR7 871 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 SLC10A4Q96EP9 437 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 TRIM6Q9C030 488 aaPredicted RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 A1CFQ9NQ94 594 aaKnown RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 CLTAP09496 248 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 NPTX2P47972 431 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 DMP1Q13316 513 aaPredicted RBP15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 BIRC2Q13490 618 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 NAB2Q15742 525 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 SPOPLQ6IQ16 392 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 CCDC60Q8IWA6 550 aaPredicted RBP15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 IQCKQ8N0W5 287 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 XXYLT1Q8NBI6 393 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 ACCSQ96QU6 501 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 OLFML3Q9NRN5 406 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 A0A1B0GUA9 196 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 MYCP01106 439 aaPredicted RBP15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 ADRB2P07550 413 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 MXI1P50539 228 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 POLGP54098 1239 aaPredicted RBP15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 CETN1Q12798 172 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 SCYL3Q8IZE3 742 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 LPAR1Q92633 364 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 RIT2Q99578 217 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 AMACRQ9UHK6 382 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 PCDHA10Q9Y5I2 948 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 SSU72P8A0A1W2PR75 194 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 GMNCA6NCL1 334 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 BUB1BO60566 1050 aaPredicted RBP15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 SGPL1O95470 568 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 GCKP35557 465 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 COBLL1Q53SF7 1204 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 FAM182AQ5T1J6 154 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 SLC35G2Q8TBE7 412 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 PIK3R5Q8WYR1 880 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 CAVIN3Q969G5 261 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 FAXDC2Q96IV6 333 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 FIZ1Q96SL8 496 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 SIX2Q9NPC8 291 aa15.56■□□□□ 0.08
SHROOM1-208ENST00000617339 KRIT1O00522 736 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 FTLP02792 175 aaPredicted RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 MYZAPP0CAP1 466 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 HNRNPH3P31942 346 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 HSD17B4P51659 736 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 PSMC5P62195 406 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 MYO1EQ12965 1108 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 RPUSD2Q8IZ73 545 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 LNX1Q8TBB1 728 aaPredicted RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 PLEKHO2Q8TD55 490 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 TATDN2Q93075 761 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 NOVA2Q9UNW9 492 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 IGSF9BQ9UPX0 1349 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 GJB1P08034 283 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 SOX5P35711 763 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 IREB2P48200 963 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 SP2Q02086 613 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 CHADLQ6NUI6 762 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 SLC47A2Q86VL8 602 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 APOBEC3FQ8IUX4 373 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 CACNA2D3Q8IZS8 1091 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 FAM118BQ9BPY3 351 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 A6NNZ2 444 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 PLS3P13797 630 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 SNRNP35Q16560 246 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 TUBB8Q3ZCM7 444 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 TAS1R2Q8TE23 839 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 NSUN6Q8TEA1 469 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 SGSM3Q96HU1 749 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 SEC16BQ96JE7 1060 aa15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 NUCKS1Q9H1E3 243 aaKnown RBP15.55■□□□□ 0.08
SHROOM1-208ENST00000617339 F8VZ95 297 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 TBC1D12O60347 775 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 CCND2P30279 289 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 CTNNA1P35221 906 aaKnown RBP15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 SCTRP47872 440 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 SEMA3FQ13275 785 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 GNPTABQ3T906 1256 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 TMEM63BQ5T3F8 832 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 GJC2Q5T442 439 aaPredicted RBP15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 PCNX4Q63HM2 1172 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 TMEM130Q8N3G9 435 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 LRRC71Q8N4P6 559 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 MDM1Q8TC05 714 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 AIPL1Q9NZN9 384 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 APEX2Q9UBZ4 518 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 FRMPD4Q14CM0 1322 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 HGSO14964 777 aaPredicted RBP15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 PRKCEQ02156 737 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 ANKRD20A8PQ5CZ79 823 aa15.54■□□□□ 0.08
SHROOM1-208ENST00000617339 HVCN1Q96D96 273 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms