RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 SLFN11Q7Z7L1 901 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 VSIG10LQ86VR7 867 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 MAP4K3Q8IVH8 894 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 USP38Q8NB14 1042 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 TPCN2Q8NHX9 752 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 CCDC26Q8TAB7 109 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 INPP4AQ96PE3 977 aaPredicted RBP11.47□□□□□ -0.57
ZNF540-208ENST00000589857 MPHOSPH6Q99547 160 aaKnown RBP11.47□□□□□ -0.57
ZNF540-208ENST00000589857 LRRC1Q9BTT6 524 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 TEX13BQ9BXU2 312 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 SLITRK6Q9H5Y7 841 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 PAK6Q9NQU5 681 aaPredicted RBP11.47□□□□□ -0.57
ZNF540-208ENST00000589857 HOMER2Q9NSB8 354 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.47□□□□□ -0.57
ZNF540-208ENST00000589857 PKD2L1Q9P0L9 805 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 VPS18Q9P253 973 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 WRAP73Q9P2S5 460 aaPredicted RBP11.47□□□□□ -0.57
ZNF540-208ENST00000589857 FBXO40Q9UH90 709 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 SALL4Q9UJQ4 1053 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 TTC7AQ9ULT0 858 aaPredicted RBP11.47□□□□□ -0.57
ZNF540-208ENST00000589857 PPME1Q9Y570 386 aa11.47□□□□□ -0.57
ZNF540-208ENST00000589857 ATAD5Q96QE3 1844 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 TMCO5BA8MYB1 307 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 DDX3XO00571 662 aaKnown RBP eCLIP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 ZC3H11AO75152 810 aaKnown RBP eCLIP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 NR3C2P08235 984 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 PTPRAP18433 802 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 GARTP22102 1010 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 MATR3P43243 847 aaKnown RBP eCLIP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 FAM110CQ1W6H9 321 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 LRIT3Q3SXY7 679 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 EPC2Q52LR7 807 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 SNRNP48Q6IEG0 339 aaKnown RBP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 SLC30A10Q6XR72 485 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 MAATS1Q7Z4T9 603 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 DAAM2Q86T65 1068 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 DEFB123Q8N688 67 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 UBL4BQ8N7F7 174 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 LRRC57Q8N9N7 239 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 CHST13Q8NET6 341 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 DNERQ8NFT8 737 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 IL31RAQ8NI17 732 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 SLC30A5Q8TAD4 765 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 AFAP1L1Q8TED9 768 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 PAWRQ96IZ0 340 aaKnown RBP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 RUNDC3BQ96NL0 473 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 AGPAT1Q99943 283 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 CRISPLD2Q9H0B8 497 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 ATP6V0A4Q9HBG4 840 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 HMX1Q9NP08 348 aaPredicted RBP11.46□□□□□ -0.57
ZNF540-208ENST00000589857 KMT5AQ9NQR1 393 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 GDF3Q9NR23 364 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 ADAM21Q9UKJ8 722 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 GABRQQ9UN88 632 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 ADAMTS5Q9UNA0 930 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 AGTPBP1Q9UPW5 1226 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 STXBP5LQ9Y2K9 1186 aa11.46□□□□□ -0.57
ZNF540-208ENST00000589857 OTOFQ9HC10 1997 aa11.46□□□□□ -0.58
ZNF540-208ENST00000589857 LOXHD1Q8IVV2 1947 aa11.46□□□□□ -0.58
ZNF540-208ENST00000589857 EMSYQ7Z589 1322 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 IGSF9BQ9UPX0 1349 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 CCDC169A6NNP5 214 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 LRRIQ3A6PVS8 624 aaPredicted RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 H3BQF6 201 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 BACH1O14867 736 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 ZBTB39O15060 712 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 CEP104O60308 925 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 ERLIN2O94905 339 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 HEXIM1O94992 359 aaKnown RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 HMGCRP04035 888 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 TRIM49P0CI25 452 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 TRIM49CP0CI26 452 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 GZMAP12544 262 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 ELNP15502 786 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 GBP1P32455 592 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 COPB2P35606 906 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 GALCP54803 685 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 PEX3P56589 373 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 MTMR3Q13615 1198 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 BAATQ14032 418 aaPredicted RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 BRDTQ58F21 947 aaPredicted RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 KRT39Q6A163 491 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 GPAT2Q6NUI2 795 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 C11orf63Q6NUN7 778 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 SND1Q7KZF4 910 aaKnown RBP eCLIP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 RASGEF1CQ8N431 466 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 MREGQ8N565 214 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 PROCA1Q8NCQ7 364 aaPredicted RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 DHX38Q92620 1227 aaKnown RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 KCNN1Q92952 543 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 LRRC45Q96CN5 670 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 ATG4CQ96DT6 458 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 NTPCRQ9BSD7 190 aaKnown RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 PACSIN1Q9BY11 444 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 TMEM8AQ9HCN3 771 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 JPH1Q9HDC5 661 aaPredicted RBP11.45□□□□□ -0.58
ZNF540-208ENST00000589857 ST7Q9NRC1 585 aa11.45□□□□□ -0.58
ZNF540-208ENST00000589857 RBM12Q9NTZ6 932 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms