RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 MRPL10Q7Z7H8 261 aaKnown RBP11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 TMEM192Q8IY95 271 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 ADSSL1Q8N142 457 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 TRIML1Q8N9V2 468 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 RNF169Q8NCN4 708 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 TOP1MTQ969P6 601 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 RNPC3Q96LT9 517 aaKnown RBP11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 ADPGKQ9BRR6 497 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 CBWD1Q9BRT8 395 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 APOL6Q9BWW8 343 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 TRIM6Q9C030 488 aaPredicted RBP11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 GBP3Q9H0R5 595 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 SEMA6BQ9H3T3 888 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 PCIF1Q9H4Z3 704 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 RNF19AQ9NV58 838 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 SNTG2Q9NY99 539 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 PCDHB7Q9Y5E2 793 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 SLC4A7Q9Y6M7 1214 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 CEP290O15078 2479 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 A0A0B4J269 797 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 GRXCR1A8MXD5 290 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 FAM189A1O60320 539 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 MCF2P10911 925 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 FGFR1P11362 822 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 AKAP5P24588 427 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 GATMP50440 423 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 RAB27AP51159 221 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 PMS1P54277 932 aaKnown RBP11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 NLRP12P59046 1061 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 DPCR1Q3MIW9 517 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 DCAF4L1Q3SXM0 396 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 FAM109BQ6ICB4 259 aaPredicted RBP11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 SLFN12LQ6IEE8 588 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 ARMCX5Q6P1M9 558 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 NPAS4Q8IUM7 802 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 THNSL1Q8IYQ7 743 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 TDHQ8IZJ6 230 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 POMGNT1Q8WZA1 660 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 SYAP1Q96A49 352 aaPredicted RBP11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 MSTO1Q9BUK6 570 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 CXCL16Q9H2A7 254 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 MTIF3Q9H2K0 278 aaKnown RBP11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 ELAC1Q9H777 363 aaKnown RBP11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 AGPAT3Q9NRZ7 376 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 TYW1Q9NV66 732 aaKnown RBP11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 TMEM161AQ9NX61 479 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 LRFN2Q9ULH4 789 aa11.7□□□□□ -0.54
SMARCA4-213ENST00000587988 GOLGA8IPA6NC78 632 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 TRIM49BA6NDI0 452 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 GOLGA8JA6NMD2 632 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 PDXKO00764 312 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 OGTO15294 1046 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 MEFVO15553 781 aaPredicted RBP11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 KIF20AO95235 890 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 EOMESO95936 686 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 STAG3L1P0CL83 205 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 SKIP12755 728 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 ITGA4P13612 1032 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 ATP2A2P16615 1042 aaKnown RBP11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 GARTP22102 1010 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 TNFSF9P41273 254 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 GRM5P41594 1212 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 ZCWPW2Q504Y3 356 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 CLLU1OSQ5K130 101 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 CENPPQ6IPU0 288 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 KLHL10Q6JEL2 608 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 CRELD2Q6UXH1 353 aaPredicted RBP11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 PHOSPHO2Q8TCD6 241 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 SAAL1Q96ER3 474 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 SLC9A7Q96T83 725 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 GTPBP4Q9BZE4 634 aaKnown RBP11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 KLK14Q9P0G3 267 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 PARP2Q9UGN5 583 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 AGO2Q9UKV8 859 aaKnown RBP11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 CTNND2Q9UQB3 1225 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 COLQQ9Y215 455 aaPredicted RBP11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 TRAF3IP3Q9Y228 551 aa11.69□□□□□ -0.54
SMARCA4-213ENST00000587988 COL4A6Q14031 1691 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 OFD1O75665 1012 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 DGKIO75912 1065 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 RECQL4O94761 1208 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 GJB5O95377 273 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 CCNE1P24864 410 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 ACOT2P49753 483 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 CYP2J2P51589 502 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 AFF1P51825 1210 aaKnown RBP11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 RABGGTBP53611 331 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 STX17P56962 302 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 SNRPFP62306 86 aaKnown RBP11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 PRPF38BQ5VTL8 546 aaKnown RBP11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 ANKRD40Q6AI12 368 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 SASS6Q6UVJ0 657 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 HS2ST1Q7LGA3 356 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 APBB1IPQ7Z5R6 666 aaPredicted RBP11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 HERC6Q8IVU3 1022 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 C12orf56Q8IXR9 622 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 MLKLQ8NB16 471 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 HELQQ8TDG4 1101 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 NELFBQ8WX92 580 aa11.68□□□□□ -0.54
SMARCA4-213ENST00000587988 P2RX5Q93086 422 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms