RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 NOTUMQ6P988 496 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 CATSPER4Q7RTX7 472 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 CREBRFQ8IUR6 639 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 EEF2KMTQ96G04 330 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 ERGIC2Q96RQ1 377 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 OSMRQ99650 979 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 VPS16Q9H269 839 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 IKZF4Q9H2S9 585 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 AGPAT5Q9NUQ2 364 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 TAB2Q9NYJ8 693 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 CDY2AQ9Y6F7 541 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 TISP43B9A030 160 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 GPR182O15218 404 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 PARNO95453 639 aaKnown RBP16.63■□□□□ 0.25
SS18-206ENST00000577572 CD4P01730 458 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 AFPP02771 609 aaKnown RBP16.63■□□□□ 0.25
SS18-206ENST00000577572 ARF4P18085 180 aaPredicted RBP16.63■□□□□ 0.25
SS18-206ENST00000577572 THPOP40225 353 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 PBX1P40424 430 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 AP3M2P53677 418 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 CLDN10P78369 228 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 UBXN1Q04323 297 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 BFSP2Q13515 415 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 PSMD6Q15008 389 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 TMEM132AQ24JP5 1023 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 ZNF568Q3ZCX4 644 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 SPECC1LQ69YQ0 1117 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 VSTM4Q8IW00 320 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 FAM126BQ8IXS8 530 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 SLC35C1Q96A29 364 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 TSPAN18Q96SJ8 248 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 NUP58Q9BVL2 599 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 PCIF1Q9H4Z3 704 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 TRMT13Q9NUP7 481 aaKnown RBP16.63■□□□□ 0.25
SS18-206ENST00000577572 ANKFY1Q9P2R3 1169 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 DAAM1Q9Y4D1 1078 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 EVPLQ92817 2033 aa16.63■□□□□ 0.25
SS18-206ENST00000577572 PITPNM1O00562 1244 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 FAM189A1O60320 539 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 B4GALT4O60513 344 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 CHRNA1P02708 482 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 EDN1P05305 212 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 MATR3P43243 847 aaKnown RBP eCLIP16.62■□□□□ 0.25
SS18-206ENST00000577572 MNX1P50219 401 aaPredicted RBP16.62■□□□□ 0.25
SS18-206ENST00000577572 VAMP7P51809 220 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 CYP24A1Q07973 514 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 TMEM62Q0P6H9 643 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 CETN1Q12798 172 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 KCNH2Q12809 1159 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 TRIM14Q14142 442 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 FIGNQ5HY92 759 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 SMYD5Q6GMV2 418 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 SLC27A1Q6PCB7 646 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 SLC39A5Q6ZMH5 540 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 TRAIPQ9BWF2 469 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 CDT1Q9H211 546 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 PDZD7Q9H5P4 517 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 INTS13Q9NVM9 706 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 GINS2Q9Y248 185 aa16.62■□□□□ 0.25
SS18-206ENST00000577572 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.62■□□□□ 0.25
SS18-206ENST00000577572 B4GALT5O43286 388 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 RPS6KA5O75582 802 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 CLTAP09496 248 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 HOXA11P31270 313 aaPredicted RBP16.61■□□□□ 0.25
SS18-206ENST00000577572 GSDMDP57764 484 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 CBWD2Q8IUF1 395 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 BRSK2Q8IWQ3 736 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 CD302Q8IX05 232 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 PARD3BQ8TEW8 1205 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 PPP1R13LQ8WUF5 828 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 DHX38Q92620 1227 aaKnown RBP16.61■□□□□ 0.25
SS18-206ENST00000577572 FAM213AQ9BRX8 229 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 EDEM3Q9BZQ6 932 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 HAPLN2Q9GZV7 340 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 TRPV6Q9H1D0 765 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 CDHR5Q9HBB8 845 aa16.61■□□□□ 0.25
SS18-206ENST00000577572 CPSF3Q9UKF6 684 aaKnown RBP16.61■□□□□ 0.25
SS18-206ENST00000577572 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.61■□□□□ 0.25
SS18-206ENST00000577572 TTLL13PA6NNM8 815 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 DCDC2CA8MYV0 355 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 IL18RAPO95256 599 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 CKBP12277 381 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 GRM5P41594 1212 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 FBXO47Q5MNV8 452 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 CRELD2Q6UXH1 353 aaPredicted RBP16.6■□□□□ 0.25
SS18-206ENST00000577572 NT5DC4Q86YG4 428 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 DRC7Q8IY82 874 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 TMEM40Q8WWA1 233 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 WNT8BQ93098 351 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 SAAL1Q96ER3 474 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 ZNF668Q96K58 619 aaPredicted RBP16.6■□□□□ 0.25
SS18-206ENST00000577572 ZBTB45Q96K62 511 aaPredicted RBP16.6■□□□□ 0.25
SS18-206ENST00000577572 PLEKHA5Q9HAU0 1116 aa16.6■□□□□ 0.25
SS18-206ENST00000577572 RBAKQ9NYW8 714 aaPredicted RBP16.6■□□□□ 0.25
SS18-206ENST00000577572 PES1O00541 588 aaKnown RBP16.59■□□□□ 0.25
SS18-206ENST00000577572 TEX33O43247 280 aa16.59■□□□□ 0.25
SS18-206ENST00000577572 MYCP01106 439 aaPredicted RBP16.59■□□□□ 0.25
SS18-206ENST00000577572 ADRB2P07550 413 aa16.59■□□□□ 0.25
SS18-206ENST00000577572 TPM1P09493 284 aa16.59■□□□□ 0.25
SS18-206ENST00000577572 SELPP16109 830 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms