RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CCL16O15467 120 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 FCARP24071 287 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 GRM2Q14416 872 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 PABPC1LQ4VXU2 614 aaKnown RBP18.39■□□□□ 0.53
VPS53-218ENST00000575207 WDR44Q5JSH3 913 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 LIN9Q5TKA1 542 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 PDXDC2PQ6P474 469 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 C1orf228Q6PIY5 440 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 CCDC60Q8IWA6 550 aaPredicted RBP18.39■□□□□ 0.53
VPS53-218ENST00000575207 CHCHD4Q8N4Q1 142 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 MCRS1Q96EZ8 462 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 ZNF668Q96K58 619 aaPredicted RBP18.39■□□□□ 0.53
VPS53-218ENST00000575207 POLIQ9UNA4 740 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 PTPN13Q12923 2485 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 C8AP07357 584 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 TMOD1P28289 359 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 RDXP35241 583 aaKnown RBP18.38■□□□□ 0.53
VPS53-218ENST00000575207 SIM1P81133 766 aaPredicted RBP18.38■□□□□ 0.53
VPS53-218ENST00000575207 CREMQ03060 361 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 DGKKQ5KSL6 1271 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 EFCAB12Q6NXP0 572 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 AGMOQ6ZNB7 445 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 PANK1Q8TE04 598 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 ING5Q8WYH8 240 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 PGBD4Q96DM1 585 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 MSANTD3Q96H12 275 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 DUSP15Q9H1R2 295 aaPredicted RBP18.38■□□□□ 0.53
VPS53-218ENST00000575207 HELLSQ9NRZ9 838 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 DNMT3BQ9UBC3 853 aaKnown RBP18.38■□□□□ 0.53
VPS53-218ENST00000575207 RAXQ9Y2V3 346 aa18.38■□□□□ 0.53
VPS53-218ENST00000575207 SHROOM3Q8TF72 1996 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 SPAARA0A1B0GVQ0 90 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 CSDE1O75534 798 aaKnown RBP18.37■□□□□ 0.53
VPS53-218ENST00000575207 RPL17P18621 184 aaKnown RBP18.37■□□□□ 0.53
VPS53-218ENST00000575207 CREB5Q02930 508 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 ITGB3BPQ13352 177 aaPredicted RBP18.37■□□□□ 0.53
VPS53-218ENST00000575207 RAB44Q7Z6P3 723 aaPredicted RBP18.37■□□□□ 0.53
VPS53-218ENST00000575207 COLGALT2Q8IYK4 626 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 PI4K2BQ8TCG2 481 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 B3GALT6Q96L58 329 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 ZNF302Q9NR11 478 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 ZBTB40Q9NUA8 1239 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 HCFC1R1Q9NWW0 138 aa18.37■□□□□ 0.53
VPS53-218ENST00000575207 MRPS23Q9Y3D9 190 aaKnown RBP18.37■□□□□ 0.53
VPS53-218ENST00000575207 TEX15Q9BXT5 2789 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 CCNE2O96020 404 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 OR1G1P47890 313 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 PXNP49023 591 aaPredicted RBP18.36■□□□□ 0.53
VPS53-218ENST00000575207 USP41Q3LFD5 358 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 TTC41PQ6P2S7 1318 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 RSAD1Q9HA92 442 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 ZFP14Q9HCL3 533 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 ZSWIM5Q9P217 1185 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 CEP131Q9UPN4 1083 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 PCDHB15Q9Y5E8 787 aa18.36■□□□□ 0.53
VPS53-218ENST00000575207 TEP1Q99973 2627 aaKnown RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 KHNYNO15037 678 aaKnown RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 ATXN7O15265 892 aaPredicted RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 POMCP01189 267 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 GDI1P31150 447 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 UAP1L1Q3KQV9 507 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 IFIT1BQ5T764 474 aaKnown RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 MRPL10Q7Z7H8 261 aaKnown RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 PIP4P1Q86T03 277 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 SYNPOQ8N3V7 929 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 ZNF843Q8N446 348 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 LRRC71Q8N4P6 559 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 LSM14AQ8ND56 463 aaKnown RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 MXRA8Q9BRK3 442 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 GPR62Q9BZJ7 368 aa18.35■□□□□ 0.53
VPS53-218ENST00000575207 AVENQ9NQS1 362 aaPredicted RBP18.35■□□□□ 0.53
VPS53-218ENST00000575207 CNTNAP2Q9UHC6 1331 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 B4E1Z4 1266 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 ARNTLO00327 626 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 EXTL3O43909 919 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 PSMC3P17980 439 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 DSC1Q08554 894 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 ELF2Q15723 593 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 UVSSAQ2YD98 709 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 SWSAP1Q6NVH7 229 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 SCLT1Q96NL6 688 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 LY9Q9HBG7 655 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 PIN4Q9Y237 131 aaKnown RBP18.34■□□□□ 0.53
VPS53-218ENST00000575207 PCDHB2Q9Y5E7 798 aa18.34■□□□□ 0.53
VPS53-218ENST00000575207 MAFBQ9Y5Q3 323 aaPredicted RBP18.34■□□□□ 0.53
VPS53-218ENST00000575207 UPK3BL1B0FP48 263 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 UPK3BL2E5RIL1 263 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 F8W810 466 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 ZNF862O60290 1169 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 RHOBTB1O94844 696 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 SRSF1Q07955 248 aaKnown RBP eCLIP18.33■□□□□ 0.527e-9■■□□□ 13.7
VPS53-218ENST00000575207 GRM4Q14833 912 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 ZNF423Q2M1K9 1284 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 SLC5A9Q2M3M2 681 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 CKAP2LQ8IYA6 745 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 NLRP7Q8WX94 980 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 GCOM2Q9BZD3 368 aaPredicted RBP18.33■□□□□ 0.52
VPS53-218ENST00000575207 AGO4Q9HCK5 861 aaKnown RBP18.33■□□□□ 0.52
VPS53-218ENST00000575207 EML5Q05BV3 1969 aa18.33■□□□□ 0.52
VPS53-218ENST00000575207 NRG2O14511 850 aaPredicted RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms