RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 HSD17B14Q9BPX1 270 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 EIF2AK1Q9BQI3 630 aaKnown RBP8.3□□□□□ -1.08
NUP88-205ENST00000572809 FDXACB1Q9BRP7 624 aaPredicted RBP8.3□□□□□ -1.08
NUP88-205ENST00000572809 LXNQ9BS40 222 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 C11orf84Q9BUA3 381 aaPredicted RBP8.3□□□□□ -1.08
NUP88-205ENST00000572809 PLVAPQ9BX97 442 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 FOXP1Q9H334 677 aaPredicted RBP8.3□□□□□ -1.08
NUP88-205ENST00000572809 ATP6V0A4Q9HBG4 840 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 CHST12Q9NRB3 414 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 TMEM161AQ9NX61 479 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 PPME1Q9Y570 386 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 PCDHB11Q9Y5F2 797 aa8.3□□□□□ -1.08
NUP88-205ENST00000572809 MRPL42Q9Y6G3 142 aaKnown RBP8.3□□□□□ -1.08
NUP88-205ENST00000572809 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 TBKBP1A7MCY6 615 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 GRM6O15303 877 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 ASAP2O43150 1006 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 LYPLA2O95372 231 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 XRCC6P12956 609 aaKnown RBP eCLIP8.29□□□□□ -1.08
NUP88-205ENST00000572809 FSHRP23945 695 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 POLGP54098 1239 aaPredicted RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 SEC13P55735 322 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 FOXK2Q01167 660 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 ZNF174Q15697 407 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 SPOUT1Q5T280 376 aaKnown RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 KANK3Q6NY19 840 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 TCP11Q8WWU5 503 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 PRPF31Q8WWY3 499 aaKnown RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 P2RX5Q93086 422 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 TMEM143Q96AN5 459 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 LMAN2LQ9H0V9 348 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 TMEM60Q9H2L4 133 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 DHX33Q9H6R0 707 aaKnown RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 ALG13Q9NP73 1137 aaKnown RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 TYW1Q9NV66 732 aaKnown RBP8.29□□□□□ -1.08
NUP88-205ENST00000572809 DACT1Q9NYF0 836 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 PLAGL2Q9UPG8 496 aa8.29□□□□□ -1.08
NUP88-205ENST00000572809 COL4A6Q14031 1691 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 A0A0U1RQF3 1178 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 GAS2O43903 313 aaKnown RBP8.28□□□□□ -1.08
NUP88-205ENST00000572809 EOMESO95936 686 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 SRGAP2CP0DJJ0 459 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 FGFR1P11362 822 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 SFPQP23246 707 aaKnown RBP eCLIP8.28□□□□□ -1.08
NUP88-205ENST00000572809 TECP42680 631 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 KCNQ1P51787 676 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 ORC2Q13416 577 aaPredicted RBP8.28□□□□□ -1.08
NUP88-205ENST00000572809 TIGD5Q53EQ6 642 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 CATSPER4Q7RTX7 472 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 ECHDC2Q86YB7 292 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 NOSTRINQ8IVI9 506 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 SIX5Q8N196 739 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 VWA5B2Q8N398 1253 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 KLHL23Q8NBE8 558 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 SPPL3Q8TCT6 385 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 NEK9Q8TD19 979 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 PSPC1Q8WXF1 523 aaKnown RBP8.28□□□□□ -1.08
NUP88-205ENST00000572809 TMX3Q96JJ7 454 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 NLRP4Q96MN2 994 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 TMEM117Q9H0C3 514 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 NSUN3Q9H649 340 aaKnown RBP8.28□□□□□ -1.08
NUP88-205ENST00000572809 IFT122Q9HBG6 1241 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 ANKEF1Q9NU02 776 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 NOL7Q9UMY1 257 aaKnown RBP8.28□□□□□ -1.08
NUP88-205ENST00000572809 KIF3AQ9Y496 699 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 MAP4K5Q9Y4K4 846 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 PCDHB12Q9Y5F1 795 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 COL4A3BPQ9Y5P4 624 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 CHD7Q9P2D1 2997 aa8.28□□□□□ -1.08
NUP88-205ENST00000572809 A0A087WWV3 80 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 CDC14CA4D256 554 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 NCK2O43639 380 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 ITGB1P05556 798 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 SPATA31C1P0DKV0 1188 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 U2AF2P26368 475 aaKnown RBP eCLIP8.27□□□□□ -1.09
NUP88-205ENST00000572809 TRAPPC10P48553 1259 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 MCM2P49736 904 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 RAB15P59190 212 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 LAMTOR4Q0VGL1 99 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 CAMK1Q14012 370 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 MXD4Q14582 209 aaPredicted RBP8.27□□□□□ -1.09
NUP88-205ENST00000572809 EMC2Q15006 297 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 TCEAL5Q5H9L2 206 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 TTC38Q5R3I4 469 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 TWF2Q6IBS0 349 aaKnown RBP8.27□□□□□ -1.09
NUP88-205ENST00000572809 SRGAP1Q7Z6B7 1085 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 FERMT3Q86UX7 667 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 CATSPER3Q86XQ3 398 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 ABI1Q8IZP0 508 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 RNF169Q8NCN4 708 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 PIGOQ8TEQ8 1089 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 POF1BQ8WVV4 589 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 SCARF2Q96GP6 870 aaPredicted RBP8.27□□□□□ -1.09
NUP88-205ENST00000572809 CASD1Q96PB1 797 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 NACC1Q96RE7 527 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 UHRF1Q96T88 793 aaPredicted RBP8.27□□□□□ -1.09
NUP88-205ENST00000572809 CWH43Q9H720 699 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 UBE2ZQ9H832 354 aaPredicted RBP8.27□□□□□ -1.09
NUP88-205ENST00000572809 TUFT1Q9NNX1 390 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 PIN4Q9Y237 131 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms