RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 NCOA7Q8NI08 942 aa10.67□□□□□ -0.7
CIITA-208ENST00000572665 PPTC7Q8NI37 304 aa10.67□□□□□ -0.7
CIITA-208ENST00000572665 EXOC6Q8TAG9 804 aa10.67□□□□□ -0.7
CIITA-208ENST00000572665 UBXN4Q92575 508 aa10.67□□□□□ -0.7
CIITA-208ENST00000572665 GTF2IRD1Q9UHL9 959 aa10.67□□□□□ -0.7
CIITA-208ENST00000572665 YBX2Q9Y2T7 364 aaKnown RBP10.67□□□□□ -0.7
CIITA-208ENST00000572665 PCDHB14Q9Y5E9 798 aa10.67□□□□□ -0.7
CIITA-208ENST00000572665 LAMA2P24043 3122 aaKnown RBP10.67□□□□□ -0.7
CIITA-208ENST00000572665 PRAMEF27A3QJZ7 478 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 GCOM1H8Y6P7 765 aaPredicted RBP10.66□□□□□ -0.7
CIITA-208ENST00000572665 IFIT3O14879 490 aaKnown RBP10.66□□□□□ -0.7
CIITA-208ENST00000572665 PPFIA4O75335 1185 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 POLR2MP0CAP2 368 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 MYCLP12524 364 aaPredicted RBP10.66□□□□□ -0.7
CIITA-208ENST00000572665 DRD2P14416 443 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 CCND2P30279 289 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 RABGGTBP53611 331 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 WTAPQ15007 396 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 PPM1JQ5JR12 505 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 TTC22Q5TAA0 569 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 STOX1Q6ZVD7 989 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 LRRC8DQ7L1W4 858 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 CATIPQ7Z7H3 387 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 HERC6Q8IVU3 1022 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 C12orf50Q8NA57 414 aaPredicted RBP10.66□□□□□ -0.7
CIITA-208ENST00000572665 MTMR8Q96EF0 704 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 FANCD2OSQ96PS1 177 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 ASB2Q96Q27 587 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 SRRTQ9BXP5 876 aaKnown RBP10.66□□□□□ -0.7
CIITA-208ENST00000572665 DISC1Q9NRI5 854 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 CORINQ9Y5Q5 1042 aa10.66□□□□□ -0.7
CIITA-208ENST00000572665 EMSYQ7Z589 1322 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 ABHD14A-ACY1A0A1B0GW23 586 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 F2P00734 622 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 SSBP05455 408 aaKnown RBP eCLIP10.65□□□□□ -0.7
CIITA-208ENST00000572665 CA3P07451 260 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 KIF5BP33176 963 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 RBL2Q08999 1139 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 ADGRE1Q14246 886 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 GRM4Q14833 912 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 SEC23AQ15436 765 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 CNKSR3Q6P9H4 555 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 CCDC81Q6ZN84 652 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 HOMER1Q86YM7 354 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 USP38Q8NB14 1042 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 TBC1D5Q92609 795 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 DHX38Q92620 1227 aaKnown RBP10.65□□□□□ -0.7
CIITA-208ENST00000572665 CUL5Q93034 780 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 FERD3LQ96RJ6 166 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 PDCD2LQ9BRP1 358 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 ATXN3LQ9H3M9 355 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 GSX1Q9H4S2 264 aaPredicted RBP10.65□□□□□ -0.7
CIITA-208ENST00000572665 RIOX1Q9H6W3 641 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 MLXIPQ9HAP2 919 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 COL20A1Q9P218 1284 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 MAD2L2Q9UI95 211 aa10.65□□□□□ -0.7
CIITA-208ENST00000572665 NOP56O00567 594 aaKnown RBP10.64□□□□□ -0.71
CIITA-208ENST00000572665 HTR3BO95264 441 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 GNAT1P11488 350 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 POU3F3P20264 500 aaPredicted RBP10.64□□□□□ -0.71
CIITA-208ENST00000572665 NOS3P29474 1203 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 GTF2F1P35269 517 aaKnown RBP eCLIP10.64□□□□□ -0.71
CIITA-208ENST00000572665 PREPP48147 710 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 GNAQP50148 359 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 NEDD9Q14511 834 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 MBTPS1Q14703 1052 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 PGM5Q15124 567 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 KIAA0753Q2KHM9 967 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 ZBTB37Q5TC79 503 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 CASC1Q6TDU7 716 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 VSIG10LQ86VR7 867 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 TMTC2Q8N394 836 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 C2CD4AQ8NCU7 369 aaPredicted RBP10.64□□□□□ -0.71
CIITA-208ENST00000572665 CTCFLQ8NI51 663 aaPredicted RBP10.64□□□□□ -0.71
CIITA-208ENST00000572665 WFDC12Q8WWY7 111 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 SPATA33Q96N06 139 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 MAP3K14Q99558 947 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 LZTS2Q9BRK4 669 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 ALG1Q9BT22 464 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 MTA3Q9BTC8 594 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 CEP41Q9BYV8 373 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 WNT10AQ9GZT5 417 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 HDAC6Q9UBN7 1215 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 SEC63Q9UGP8 760 aaKnown RBP10.64□□□□□ -0.71
CIITA-208ENST00000572665 COG5Q9UP83 839 aa10.64□□□□□ -0.71
CIITA-208ENST00000572665 UNC80Q8N2C7 3258 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 HAS3O00219 553 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 FANCGO15287 622 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 GGPS1O95749 300 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 CYP21A2P08686 494 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 CKBP12277 381 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 GLB1P16278 677 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 SMARCA1P28370 1054 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 NTF4P34130 210 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 CELF3Q5SZQ8 465 aaKnown RBP10.63□□□□□ -0.71
CIITA-208ENST00000572665 XRRA1Q6P2D8 792 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 CYB5R4Q7L1T6 521 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 DYMQ7RTS9 669 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 RNF214Q8ND24 703 aa10.63□□□□□ -0.71
CIITA-208ENST00000572665 GIMAP8Q8ND71 665 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms