RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SCNN1GP51170 649 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 MTAPQ13126 283 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 AAMPQ13685 434 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 COL9A2Q14055 689 aaPredicted RBP18.12■□□□□ 0.49
CLK3-223ENST00000568488 PPM1LQ5SGD2 360 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 LIN9Q5TKA1 542 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 FUT10Q6P4F1 479 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 ZNF852Q6ZMS4 543 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 SMG8Q8ND04 991 aaKnown RBP18.12■□□□□ 0.49
CLK3-223ENST00000568488 ITFG1Q8TB96 612 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 FAM126AQ9BYI3 521 aaPredicted RBP18.12■□□□□ 0.49
CLK3-223ENST00000568488 RNF39Q9H2S5 420 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 BRPF3Q9ULD4 1205 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 NAP1L2Q9ULW6 460 aaPredicted RBP18.12■□□□□ 0.49
CLK3-223ENST00000568488 MRPS17Q9Y2R5 130 aaKnown RBP18.12■□□□□ 0.49
CLK3-223ENST00000568488 COL4A3BPQ9Y5P4 624 aa18.12■□□□□ 0.49
CLK3-223ENST00000568488 MTCL1Q9Y4B5 1905 aaKnown RBP18.11■□□□□ 0.49
CLK3-223ENST00000568488 BAHCC1Q9P281 2608 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 CCL16O15467 120 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 HOXA11P31270 313 aaPredicted RBP18.11■□□□□ 0.49
CLK3-223ENST00000568488 NRLP54845 237 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 DSC1Q08554 894 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 PFKFB3Q16875 520 aaPredicted RBP18.11■□□□□ 0.49
CLK3-223ENST00000568488 LAIR1Q6GTX8 287 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 PRSS55Q6UWB4 352 aaPredicted RBP18.11■□□□□ 0.49
CLK3-223ENST00000568488 RABGGTAQ92696 567 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 SLC5A5Q92911 643 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 ZFP42Q96MM3 310 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 MBOAT7Q96N66 472 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 JPH2Q9BR39 696 aaPredicted RBP18.11■□□□□ 0.49
CLK3-223ENST00000568488 APOL6Q9BWW8 343 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 ZMYND12Q9H0C1 365 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 MINDY3Q9H8M7 445 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 PRMT8Q9NR22 394 aaPredicted RBP18.11■□□□□ 0.49
CLK3-223ENST00000568488 ANGPTL2Q9UKU9 493 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 IPPQ9Y573 584 aa18.11■□□□□ 0.49
CLK3-223ENST00000568488 DOCK6Q96HP0 2047 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 TADA2AO75478 443 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 C8AP07357 584 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 RPS9P46781 194 aaKnown RBP18.1■□□□□ 0.49
CLK3-223ENST00000568488 CREMQ03060 361 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 ADCY1Q08828 1119 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 CREB3L3Q68CJ9 461 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 PLA2G4FQ68DD2 849 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 SRGAP1Q7Z6B7 1085 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 CELF5Q8N6W0 485 aaKnown RBP18.1■□□□□ 0.49
CLK3-223ENST00000568488 CCDC12Q8WUD4 166 aaPredicted RBP18.1■□□□□ 0.49
CLK3-223ENST00000568488 PRPF31Q8WWY3 499 aaKnown RBP18.1■□□□□ 0.49
CLK3-223ENST00000568488 TCEANC2Q96MN5 208 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 HEBP1Q9NRV9 189 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 SEMA4GQ9NTN9 838 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 NDRG2Q9UN36 371 aaKnown RBP18.1■□□□□ 0.49
CLK3-223ENST00000568488 HES2Q9Y543 173 aa18.1■□□□□ 0.49
CLK3-223ENST00000568488 ESYT2A0FGR8 921 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 XYLBO75191 536 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 RETP07949 1114 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 HNRNPA1P09651 372 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLK3-223ENST00000568488 GNA11P29992 359 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 CDC27P30260 824 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 PPP2R5DQ14738 602 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 RDM1Q8NG50 284 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 ING5Q8WYH8 240 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 TMEM143Q96AN5 459 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 EIF2AQ9BY44 585 aaKnown RBP18.09■□□□□ 0.49
CLK3-223ENST00000568488 ADAM28Q9UKQ2 775 aa18.09■□□□□ 0.49
CLK3-223ENST00000568488 KLF18A0A0U1RQI7 1052 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 GDF9O60383 454 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 ERLIN2O94905 339 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 ADD1P35611 737 aaKnown RBP18.08■□□□□ 0.48
CLK3-223ENST00000568488 FZD5Q13467 585 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 PRR23CQ6ZRP0 262 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 ANO5Q75V66 913 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 CEP57Q86XR8 500 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 GPR65Q8IYL9 337 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 SLC7A3Q8WY07 619 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 PLA2G2FQ9BZM2 168 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 LSG1Q9H089 658 aaKnown RBP18.08■□□□□ 0.48
CLK3-223ENST00000568488 SH2B1Q9NRF2 756 aaPredicted RBP18.08■□□□□ 0.48
CLK3-223ENST00000568488 BMP2KQ9NSY1 1161 aaPredicted RBP18.08■□□□□ 0.48
CLK3-223ENST00000568488 FBXW11Q9UKB1 542 aa18.08■□□□□ 0.48
CLK3-223ENST00000568488 LRP3O75074 770 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 PSMD10O75832 226 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 NPEPPSP55786 919 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 NCBP1Q09161 790 aaKnown RBP18.07■□□□□ 0.48
CLK3-223ENST00000568488 LAMTOR4Q0VGL1 99 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 SIM2Q14190 667 aaPredicted RBP18.07■□□□□ 0.48
CLK3-223ENST00000568488 RTP2Q5QGT7 225 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 IL31Q6EBC2 164 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 BICD2Q8TD16 824 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 PSPC1Q8WXF1 523 aaKnown RBP18.07■□□□□ 0.48
CLK3-223ENST00000568488 MCRS1Q96EZ8 462 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 CPB2Q96IY4 423 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 CLSTN3Q9BQT9 956 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 HCFC1R1Q9NWW0 138 aa18.07■□□□□ 0.48
CLK3-223ENST00000568488 EDIL3O43854 480 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 USP11P51784 963 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 CSRP2Q16527 193 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 PABPC1LQ4VXU2 614 aaKnown RBP18.06■□□□□ 0.48
CLK3-223ENST00000568488 N4BP2L1Q5TBK1 243 aaPredicted RBP18.06■□□□□ 0.48
CLK3-223ENST00000568488 NOTUMQ6P988 496 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms