RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CASP2P42575 452 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 SELENOPP49908 381 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 SESN2P58004 480 aaPredicted RBP5.86□□□□□ -1.47
VPS35-205ENST00000563984 SESN3P58005 492 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 SLC6A3Q01959 620 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 RAPGEF1Q13905 1077 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 TAF11Q15544 211 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 TBR1Q16650 682 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 C21orf62-AS1Q17RA5 79 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 HS1BP3Q53T59 392 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 CCDC158Q5M9N0 1113 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 SLFN12LQ6IEE8 588 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 KIAA0907Q7Z7F0 614 aaPredicted RBP5.86□□□□□ -1.47
VPS35-205ENST00000563984 BCL6BQ8N143 479 aaPredicted RBP5.86□□□□□ -1.47
VPS35-205ENST00000563984 CCDC191Q8NCU4 936 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 LPPQ93052 612 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 CENPTQ96BT3 561 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 VMP1Q96GC9 406 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 TRIM6Q9C030 488 aaPredicted RBP5.86□□□□□ -1.47
VPS35-205ENST00000563984 MTFR1LQ9H019 292 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 OXSMQ9NWU1 459 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 COMMD8Q9NX08 183 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 SAE1Q9UBE0 346 aaPredicted RBP5.86□□□□□ -1.47
VPS35-205ENST00000563984 SLC45A1Q9Y2W3 748 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 PMS2P1A4D2B8 440 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 FAM83GA6ND36 823 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 TMEM110-MUSTN1A8MSY1 372 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 MATN2O00339 956 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CHL1O00533 1208 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 ENPP3O14638 875 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 KPNA6O60684 536 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CDC14BO60729 498 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 RNASEH2AO75792 299 aaKnown RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 RPN1P04843 607 aaKnown RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 ATP2A2P16615 1042 aaKnown RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 VCAM1P19320 739 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 PTX3P26022 381 aaPredicted RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 TRAPPC10P48553 1259 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 STAT5BP51692 787 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CCDC15Q0P6D6 951 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CHAF1AQ13111 956 aaPredicted RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 NOLC1Q14978 699 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS35-205ENST00000563984 BRD3Q15059 726 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 VPS72Q15906 364 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CCDC93Q567U6 631 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 DALRD3Q5D0E6 543 aaKnown RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 JAKMIP3Q5VZ66 844 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CREB3L3Q68CJ9 461 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 CNNM4Q6P4Q7 775 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 KLHDC10Q6PID8 442 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 DAAM2Q86T65 1068 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 PASD1Q8IV76 773 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 SAMD14Q8IZD0 417 aaPredicted RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 ARL6IP6Q8N6S5 226 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 EFHBQ8N7U6 833 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 TEX19Q8NA77 164 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 TDRD7Q8NHU6 1098 aaKnown RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 STAG1Q8WVM7 1258 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 GIMAP1Q8WWP7 306 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 ERP27Q96DN0 273 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 MFSD3Q96ES6 412 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 WWC2-AS2Q96NR7 200 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 TUBGCP5Q96RT8 1024 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 MAP3K14Q99558 947 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 ELF4Q99607 663 aaPredicted RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 ZNF747Q9BV97 191 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 C12orf65Q9H3J6 166 aaKnown RBP5.85□□□□□ -1.47
VPS35-205ENST00000563984 AS3MTQ9HBK9 375 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 HOXC10Q9NYD6 342 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 KCMF1Q9P0J7 381 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 HDAC9Q9UKV0 1011 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 KIF3AQ9Y496 699 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 TESMINQ9Y4I5 508 aa5.85□□□□□ -1.47
VPS35-205ENST00000563984 DNAJC6O75061 913 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 H2AFYO75367 372 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 RAD17O75943 681 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 KIAA0754O94854 1291 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 XBP1P17861 261 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 RPS19P39019 145 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 TNNT3P45378 269 aaPredicted RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 BCAR1P56945 870 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 DSG1Q02413 1049 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 EIF2B5Q13144 721 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 SEPT7Q16181 437 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 ZSCAN26Q16670 478 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 DGKDQ16760 1214 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 ODR4Q5SWX8 454 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 PRAMEF9Q5VWM5 478 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 TIGD7Q6NT04 549 aaPredicted RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 PHYKPLQ8IUZ5 450 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 BRSK2Q8IWQ3 736 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 CFHR4Q92496 578 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 TAF4BQ92750 862 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 RPGRQ92834 1020 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 GFM2Q969S9 779 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 TIGD1Q96MW7 591 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 DPYSL5Q9BPU6 564 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 NELFAQ9H3P2 528 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 RRAGDQ9NQL2 400 aaPredicted RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 TOMM22Q9NS69 142 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms