RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HTRA4P83105 476 aaPredicted RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 MCL1Q07820 350 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 NOLC1Q14978 699 aaKnown RBP eCLIP23.84■■□□□ 1.41
SNX1-210ENST00000560260 STXBP4Q6ZWJ1 553 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 TMEM192Q8IY95 271 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 CCDC47Q96A33 483 aaKnown RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 ADPGKQ9BRR6 497 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 APOL6Q9BWW8 343 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 LRFN2Q9ULH4 789 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 PCDHB7Q9Y5E2 793 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 LCHNA4D1U4 455 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 SOX1O00570 391 aaPredicted RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 TGFB1I1O43294 461 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 EOMESO95936 686 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 STAG3L1P0CL83 205 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 MCF2P10911 925 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 SKIP12755 728 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 BMP6P22004 513 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 ADSSP30520 456 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 LRIT3Q3SXY7 679 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 ISM2Q6H9L7 571 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 ZNF689Q96CS4 500 aaPredicted RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 PBX4Q9BYU1 374 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 TRIM6Q9C030 488 aaPredicted RBP23.84■■□□□ 1.41
SNX1-210ENST00000560260 RMND1Q9NWS8 449 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 SNTG2Q9NY99 539 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 STYXL1Q9Y6J8 313 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 BIN1O00499 593 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 FAM189A1O60320 539 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 AKAP5P24588 427 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 AFF1P51825 1210 aaKnown RBP23.83■■□□□ 1.4
SNX1-210ENST00000560260 SEZ6Q53EL9 994 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 ZBTB41Q5SVQ8 909 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 TCHPQ9BT92 498 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 CXCL16Q9H2A7 254 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 TMEM206Q9H813 350 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 KIAA1468Q9P260 1216 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 EXOC7Q9UPT5 735 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 MAPK8IP1Q9UQF2 711 aa23.83■■□□□ 1.4
SNX1-210ENST00000560260 CHD9Q3L8U1 2897 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 A0A0B4J269 797 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 CLDN3O15551 220 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 MEFVO15553 781 aaPredicted RBP23.82■■□□□ 1.4
SNX1-210ENST00000560260 TLL1O43897 1013 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 ITGA4P13612 1032 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 ZNF658Q5TYW1 1059 aaPredicted RBP23.82■■□□□ 1.4
SNX1-210ENST00000560260 SYCP3Q8IZU3 236 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 ZSWIM2Q8NEG5 633 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 SP7Q8TDD2 431 aaPredicted RBP23.82■■□□□ 1.4
SNX1-210ENST00000560260 HELQQ8TDG4 1101 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 CASD1Q96PB1 797 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 CBWD1Q9BRT8 395 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 HCSTQ9UBK5 93 aa23.82■■□□□ 1.4
SNX1-210ENST00000560260 RECQL4O94761 1208 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 GRM5P41594 1212 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 OSTNP61366 133 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 MORC3Q14149 939 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 PAN2Q504Q3 1202 aaKnown RBP23.81■■□□□ 1.4
SNX1-210ENST00000560260 THNSL1Q8IYQ7 743 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 PGBD4Q96DM1 585 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 YME1L1Q96TA2 773 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 RAD9AQ99638 391 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 ZBED2Q9BTP6 218 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 KCTD10Q9H3F6 313 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 RSAD1Q9HA92 442 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 PCDHA11Q9Y5I1 949 aa23.81■■□□□ 1.4
SNX1-210ENST00000560260 KIAA1671Q9BY89 1806 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 OFD1O75665 1012 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 MLH1P40692 756 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 TNFSF9P41273 254 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 MATR3P43243 847 aaKnown RBP eCLIP23.8■■□□□ 1.4
SNX1-210ENST00000560260 SMAD3P84022 425 aaKnown RBP23.8■■□□□ 1.4
SNX1-210ENST00000560260 KNOP1Q1ED39 458 aaKnown RBP23.8■■□□□ 1.4
SNX1-210ENST00000560260 SPRED2Q7Z698 418 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 GUF1Q8N442 669 aaKnown RBP23.8■■□□□ 1.4
SNX1-210ENST00000560260 MSTO1Q9BUK6 570 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 TMEM117Q9H0C3 514 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 GBP3Q9H0R5 595 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 AGPAT3Q9NRZ7 376 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 KLK14Q9P0G3 267 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 TMEM63CQ9P1W3 806 aa23.8■■□□□ 1.4
SNX1-210ENST00000560260 TBKBP1A7MCY6 615 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 CD44P16070 742 aaKnown RBP23.79■■□□□ 1.4
SNX1-210ENST00000560260 PRCPP42785 496 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 RBM43Q6ZSC3 357 aaKnown RBP23.79■■□□□ 1.4
SNX1-210ENST00000560260 ZFP42Q96MM3 310 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 GAD1Q99259 594 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 NKX2-4Q9H2Z4 354 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 INPP5FQ9Y2H2 1132 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 INSL6Q9Y581 213 aa23.79■■□□□ 1.4
SNX1-210ENST00000560260 RALGAPA2Q2PPJ7 1873 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 OGTO15294 1046 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 HOXA2O43364 376 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 CA3P07451 260 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 LINC00271P0C7V0 271 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 DNAJB2P25686 324 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 COBLL1Q53SF7 1204 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 APBB1IPQ7Z5R6 666 aaPredicted RBP23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms