RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 STYXL1Q9Y6J8 313 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ZBBXA8MT70 800 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 C9IYK1 514 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 SOX1O00570 391 aaPredicted RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 CETN3O15182 167 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 OGTO15294 1046 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 B4GALT5O43286 388 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 NPTXRO95502 500 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 CLTAP09496 248 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 ITGA4P13612 1032 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 PROZP22891 400 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 ERCC5P28715 1186 aaPredicted RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 YARSP54577 528 aaKnown RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 MCL1Q07820 350 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 PAK1Q13153 545 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 SURF1Q15526 300 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 NFIL3Q16649 462 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 TPD52L1Q16890 204 aaPredicted RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 EDRF1Q3B7T1 1238 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 LRIT3Q3SXY7 679 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 TMEM240Q5SV17 173 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 CENPPQ6IPU0 288 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 MRPL10Q7Z7H8 261 aaKnown RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 ZBTB33Q86T24 672 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 USP37Q86T82 979 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 NPAS4Q8IUM7 802 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 C12orf56Q8IXR9 622 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 P2RX5Q93086 422 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 LRCH3Q96II8 777 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 ACAP3Q96P50 834 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 TSPAN18Q96SJ8 248 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 SLC9A7Q96T83 725 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 TMX1Q9H3N1 280 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 PTPRHQ9HD43 1115 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 TOPORSQ9NS56 1045 aaPredicted RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 TMEM161AQ9NX61 479 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 ANKFY1Q9P2R3 1169 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 AGO2Q9UKV8 859 aaKnown RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 MAPK8IP1Q9UQF2 711 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 TRAF3IP3Q9Y228 551 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 PCDHB2Q9Y5E7 798 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 SLC4A7Q9Y6M7 1214 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 ANK1P16157 1881 aa10.08□□□□□ -0.8
LDLR-210ENST00000559340 PDCD11Q14690 1871 aaKnown RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 FNDC1Q4ZHG4 1894 aaPredicted RBP10.08□□□□□ -0.8
LDLR-210ENST00000559340 RALGAPA2Q2PPJ7 1873 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 ZMYM2Q9UBW7 1377 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 A0A0B4J269 797 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 CARNS1A5YM72 827 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 PPP1R3GB7ZBB8 358 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 ANKRD63C9JTQ0 380 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 DLL1O00548 723 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 EXTL3O43909 919 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 GRM5P41594 1212 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 FKBP3Q00688 224 aaKnown RBP10.07□□□□□ -0.8
LDLR-210ENST00000559340 KCNA1Q09470 495 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 EEF1DP3Q658K8 133 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 KLHL10Q6JEL2 608 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 OTOP2Q7RTS6 562 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 RTN4RL1Q86UN2 441 aaPredicted RBP10.07□□□□□ -0.8
LDLR-210ENST00000559340 ECHDC2Q86YB7 292 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 SLC9A9Q8IVB4 645 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 CD302Q8IX05 232 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 ABI1Q8IZP0 508 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 GPD1LQ8N335 351 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 XXYLT1Q8NBI6 393 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 GLIS3Q8NEA6 775 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 TMEM174Q8WUU8 243 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 NELFBQ8WX92 580 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 ZBTB45Q96K62 511 aaPredicted RBP10.07□□□□□ -0.8
LDLR-210ENST00000559340 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.07□□□□□ -0.85e-8■□□□□ 11.1
LDLR-210ENST00000559340 FGFBP2Q9BYJ0 223 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 CDT1Q9H211 546 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 KCTD10Q9H3F6 313 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 RPF1Q9H9Y2 349 aaKnown RBP10.07□□□□□ -0.8
LDLR-210ENST00000559340 PLEKHA5Q9HAU0 1116 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 AGPAT3Q9NRZ7 376 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 KANSL3Q9P2N6 904 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 PARP2Q9UGN5 583 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 RWDD2AQ9UIY3 292 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 FRMD4BQ9Y2L6 1034 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 GIT1Q9Y2X7 761 aa10.07□□□□□ -0.8
LDLR-210ENST00000559340 ZNF233A6NK53 670 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 SMTNL1A8MU46 457 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 CLIC2O15247 247 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 TGFB1I1O43294 461 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 XPOTO43592 962 aaKnown RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 MGEA5O60502 916 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 EXOC3O60645 756 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 GNA14O95837 355 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 NR3C1P04150 777 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 HARSP12081 509 aaKnown RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 HOXD13P35453 343 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 WDR5P61964 334 aaKnown RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 TYRO3Q06418 890 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 ADAM9Q13443 819 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 ZSCAN23Q3MJ62 389 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 UBXN11Q5T124 520 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 GLB1LQ6UWU2 654 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 C16orf59Q7L2K0 433 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms