RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SOX7Q9BT81 388 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 LRFN3Q9BTN0 628 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 SARGQ9BW04 601 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 PRDM11Q9NQV5 511 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 GALNT8Q9NY28 637 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ZFP69BQ9UJL9 534 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 RCAN3Q9UKA8 241 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 DENND2AQ9ULE3 1009 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 IPPQ9Y573 584 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 PCDHGB6Q9Y5F9 930 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 CDY2AQ9Y6F7 541 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 NUMBLQ9Y6R0 609 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 A0A0A6YYJ9 748 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 TPP1O14773 563 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 ERC2O15083 957 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 FOXS1O43638 330 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 B3GALT2O43825 422 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 TMEM127O75204 238 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 UBXN7O94888 489 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 HNRNPLP14866 589 aaKnown RBP eCLIP2.1□□□□□ -2.07
USP3-209ENST00000558925 RHCEP18577 417 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 AKAP5P24588 427 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 SLC5A3P53794 718 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 BCAR1P56945 870 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PPP2CBP62714 309 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PPP2CAP67775 309 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 NKX3-2P78367 333 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 RHDQ02161 417 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PPP3CAQ08209 521 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 MGAT5Q09328 741 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 SLC9A5Q14940 896 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 SEPT2Q15019 361 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 BRD3Q15059 726 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 SURF1Q15526 300 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 ADRM1Q16186 407 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 NRN1LQ496H8 165 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 USP39Q53GS9 565 aaKnown RBP2.1□□□□□ -2.07
USP3-209ENST00000558925 C10orf62Q5T681 223 aaPredicted RBP2.1□□□□□ -2.07
USP3-209ENST00000558925 GORABQ5T7V8 394 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 FNDC7Q5VTL7 733 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 USP45Q70EL2 814 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 BCL6BQ8N143 479 aaPredicted RBP2.1□□□□□ -2.07
USP3-209ENST00000558925 PRR18Q8N4B5 295 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 GLB1L3Q8NCI6 653 aaPredicted RBP2.1□□□□□ -2.07
USP3-209ENST00000558925 FBXO18Q8NFZ0 1043 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PJA1Q8NG27 643 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 OR14C36Q8NHC7 312 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 CALML6Q8TD86 181 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 MORC4Q8TE76 937 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 NEU4Q8WWR8 484 aaPredicted RBP2.1□□□□□ -2.07
USP3-209ENST00000558925 GAB3Q8WWW8 586 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 E2F7Q96AV8 911 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 RAX2Q96IS3 184 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 NT5C1BQ96P26 610 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 CRAMP1Q96RY5 1269 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 MAP3K14Q99558 947 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 APOL5Q9BWW9 433 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 B3GNT5Q9BYG0 378 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PITHD1Q9GZP4 211 aaPredicted RBP2.1□□□□□ -2.07
USP3-209ENST00000558925 OR10A5Q9H207 317 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 DDX21Q9NR30 783 aaKnown RBP eCLIP2.1□□□□□ -2.07
USP3-209ENST00000558925 C1orf112Q9NSG2 853 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 HSPBP1Q9NZL4 362 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 FNIP2Q9P278 1114 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 ARHGAP20Q9P2F6 1191 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 USP25Q9UHP3 1055 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 TAGLN3Q9UI15 199 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 DNAI1Q9UI46 699 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 SCOCQ9UIL1 159 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 KCNG1Q9UIX4 513 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 CROTQ9UKG9 612 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 INTUQ9ULD6 942 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 SYNPO2Q9UMS6 1093 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PTPN22Q9Y2R2 807 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PCDHB6Q9Y5E3 794 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PCDHA13Q9Y5I0 950 aa2.1□□□□□ -2.07
USP3-209ENST00000558925 PLEKHD1A6NEE1 506 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 C9orf118A6NHY6 69 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 WNT10BO00744 389 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 ADCY6O43306 1168 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 TUSC2O75896 110 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 SEC24DO94855 1032 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 ENO2P09104 434 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 C1SP09871 688 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 NBPF7P0C2Y1 421 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 U2AF1L5P0DN76 240 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 SLC5A1P13866 664 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MTHFD2P13995 350 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 GSPT1P15170 499 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 KRT4P19013 534 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 VCAM1P19320 739 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 APEX1P27695 318 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 HTR1BP28222 390 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MCAMP43121 646 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 STAT5BP51692 787 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MAP2K6P52564 334 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 SLC16A1P53985 500 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 INHBCP55103 352 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MLLT6P55198 1093 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 U2AF1Q01081 240 aaKnown RBP eCLIP2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms