RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 KPNA6O60684 536 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 RAB11FIP3O75154 756 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 RFPL3O75679 317 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 LTA4HP09960 611 aaKnown RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 SDSP20132 328 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 LSP1P33241 339 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 CLK3P49761 638 aaKnown RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 PABPC4Q13310 644 aaKnown RBP eCLIP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 MPP3Q13368 585 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 BMS1Q14692 1282 aaKnown RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 UBE3CQ15386 1083 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 SPDYE7PQ495Y7 208 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 PRR16Q569H4 304 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 GPR158Q5T848 1215 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 C11orf74Q86VG3 221 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 SYNPOQ8N3V7 929 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 MSL3Q8N5Y2 521 aaKnown RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 ZFP28Q8NHY6 868 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 CAGE1Q8TC20 777 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 CHTF18Q8WVB6 975 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 LINC00476Q8WZB0 136 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 ZNF496Q96IT1 587 aaPredicted RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 PAWRQ96IZ0 340 aaKnown RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 FDXACB1Q9BRP7 624 aaPredicted RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 TLK1Q9UKI8 766 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 CDK11AQ9UQ88 783 aaPredicted RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 EPN1Q9Y6I3 576 aaPredicted RBP3.97□□□□□ -1.77
VPS13C-205ENST00000558088 NUMBLQ9Y6R0 609 aa3.97□□□□□ -1.77
VPS13C-205ENST00000558088 PPP1R12AO14974 1030 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 ASMTLO95671 621 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 ESRRBO95718 433 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 FOSP01100 380 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 GASTP01350 101 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 TYRP1P17643 537 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 PTTG1IPP53801 180 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 SQSTM1Q13501 440 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 PDCD4Q53EL6 469 aaKnown RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 COLEC12Q5KU26 742 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 ZBTB41Q5SVQ8 909 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 NXPE1Q8N323 547 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 BOLLQ8N9W6 283 aaKnown RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 OR14C36Q8NHC7 312 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 DUSP26Q9BV47 211 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 REXO4Q9GZR2 422 aaKnown RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 KIAA1586Q9HCI6 787 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 TESQ9UGI8 421 aaKnown RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 ATP11BQ9Y2G3 1177 aa3.96□□□□□ -1.78
VPS13C-205ENST00000558088 USP15Q9Y4E8 981 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-205ENST00000558088 TBKBP1A7MCY6 615 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 ITGA10O75578 1167 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 CDKL5O76039 1030 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 ITGAMP11215 1152 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 SCNN1BP51168 640 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 PHC1P78364 1004 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 DSG1Q02413 1049 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 RESTQ13127 1097 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 TP53BP2Q13625 1128 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 C19orf54Q5BKX5 351 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 EPHA10Q5JZY3 1008 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 SYT12Q8IV01 421 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 SLC44A3Q8N4M1 653 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 ZNF610Q8N9Z0 462 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 RNF169Q8NCN4 708 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 SH3TC2Q8TF17 1288 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 DNAJC2Q99543 621 aaKnown RBP3.95□□□□□ -1.78
VPS13C-205ENST00000558088 NOX1Q9Y5S8 564 aa3.95□□□□□ -1.78
VPS13C-205ENST00000558088 PRSS38A1L453 326 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 ZNF891A8MT65 544 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-205ENST00000558088 ZNF185O15231 689 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 SPDEFO95238 335 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 FDXRP22570 491 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 FOXI1Q12951 378 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 TCEA2Q15560 299 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 BMT2Q1RMZ1 405 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 FRMD7Q6ZUT3 714 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 SIMC1Q8NDZ2 872 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 MDM1Q8TC05 714 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 ZNF480Q8WV37 535 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 ASB10Q8WXI3 467 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 PHACTR3Q96KR7 559 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 GPR101Q96P66 508 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-205ENST00000558088 TEX101Q9BY14 249 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 GPRC5DQ9NZD1 345 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 DKK2Q9UBU2 259 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 PRSS50Q9UI38 385 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 MAP3K2Q9Y2U5 619 aa3.94□□□□□ -1.78
VPS13C-205ENST00000558088 ZMYM3Q14202 1370 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 INO80B-WBP1J3KQ70 363 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 TGM5O43548 720 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 KDM1AO60341 852 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 EGR2P11161 476 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-205ENST00000558088 PLA2G5P39877 138 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 IL2P60568 153 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 ATXN7L2Q5T6C5 722 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-205ENST00000558088 FAM102AQ5T9C2 384 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-205ENST00000558088 ANKS6Q68DC2 871 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 BTNL9Q6UXG8 535 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 AHI1Q8N157 1196 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 PPM1KQ8N3J5 372 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms