RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 PTPRHQ9HD43 1115 aa11.13□□□□□ -0.63
SRP54-208ENST00000555557 TRIM49P0CI25 452 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 TRIM49CP0CI26 452 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 PROZP22891 400 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CDC25BP30305 580 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 TNFSF9P41273 254 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 KLK7P49862 253 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CRYBB1P53674 252 aaPredicted RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 ATN1P54259 1190 aaPredicted RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 OSTNP61366 133 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 PTPN11Q06124 597 aaPredicted RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 ZNF568Q3ZCX4 644 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 MPZL3Q6UWV2 235 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CRELD2Q6UXH1 353 aaPredicted RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 CATSPER4Q7RTX7 472 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 RSPH3Q86UC2 560 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CEP120Q8N960 986 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 DIS3LQ8TF46 1054 aaKnown RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 SLC35C1Q96A29 364 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CCDC127Q96BQ5 260 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 PRIMPOLQ96LW4 560 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 POP1Q99575 1024 aaKnown RBP11.12□□□□□ -0.63
SRP54-208ENST00000555557 MCOLN1Q9GZU1 580 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CRISPLD2Q9H0B8 497 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 CNTNAP2Q9UHC6 1331 aa11.12□□□□□ -0.63
SRP54-208ENST00000555557 FRMPD3Q5JV73 1810 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 M0QZ92 97 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 EXTL3O43909 919 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 HOXA11P31270 313 aaPredicted RBP11.11□□□□□ -0.63
SRP54-208ENST00000555557 PBX1P40424 430 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 WNT7BP56706 349 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 MCL1Q07820 350 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 BFSP1Q12934 665 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 PTK7Q13308 1070 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 THNSL1Q8IYQ7 743 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 FAM84AQ96KN4 292 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 CRACR2AQ9BSW2 395 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 PDZD7Q9H5P4 517 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 TNFSF13BQ9Y275 285 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 NOC2LQ9Y3T9 749 aaKnown RBP11.11□□□□□ -0.63
SRP54-208ENST00000555557 TRPV2Q9Y5S1 764 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 A0A1B0GUA9 196 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 ZNF233A6NK53 670 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 FAM189A1O60320 539 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 KRT13P13646 458 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 CDK7P50613 346 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 VAMP7P51809 220 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 GOLGA8FQ08AF8 430 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 MGAT3Q09327 533 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 GOLGA8DPQ0D2H9 430 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 NOLC1Q14978 699 aaKnown RBP eCLIP11.11□□□□□ -0.63
SRP54-208ENST00000555557 SYCP1Q15431 976 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 TRIM71Q2Q1W2 868 aaKnown RBP11.11□□□□□ -0.63
SRP54-208ENST00000555557 C1orf220Q5T0J3 134 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 FKBP15Q5T1M5 1219 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 ZNF618Q5T7W0 954 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 SPECC1LQ69YQ0 1117 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 INTS8Q75QN2 995 aaKnown RBP11.11□□□□□ -0.63
SRP54-208ENST00000555557 TMEM192Q8IY95 271 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 CDT1Q9H211 546 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 SIP14410 1827 aa11.11□□□□□ -0.63
SRP54-208ENST00000555557 AFPP02771 609 aaKnown RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 PTMAP06454 111 aaKnown RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 DLATP10515 647 aaKnown RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 SFPQP23246 707 aaKnown RBP eCLIP11.1□□□□□ -0.63
SRP54-208ENST00000555557 GJA8P48165 433 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 CYP24A1Q07973 514 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 PPP3CAQ08209 521 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 NFX1Q12986 1120 aaKnown RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 ARID5BQ14865 1188 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 CBWD6Q4V339 395 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 CBWD3Q5JTY5 395 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 CBWD5Q5RIA9 395 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 LMBRD2Q68DH5 695 aaPredicted RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 CCDC186Q7Z3E2 898 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 RPAINQ86UA6 219 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 FAM228AQ86W67 206 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 PARD3BQ8TEW8 1205 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 CPLX3Q8WVH0 158 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 MFSD14AQ96MC6 490 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 PDE11AQ9HCR9 933 aa11.1□□□□□ -0.63
SRP54-208ENST00000555557 TOPORSQ9NS56 1045 aaPredicted RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 PIN4Q9Y237 131 aaKnown RBP11.1□□□□□ -0.63
SRP54-208ENST00000555557 CCDC85CA6NKD9 419 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 LRRIQ3A6PVS8 624 aaPredicted RBP11.09□□□□□ -0.63
SRP54-208ENST00000555557 MAPK13O15264 365 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 OGTO15294 1046 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 PQBP1O60828 265 aaKnown RBP11.09□□□□□ -0.63
SRP54-208ENST00000555557 LDHAP00338 332 aaKnown RBP11.09□□□□□ -0.63
SRP54-208ENST00000555557 CKBP12277 381 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 GCLMP48507 274 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 APBA1Q02410 837 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 KCNMA1Q12791 1236 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 FAM126BQ8IXS8 530 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 FAM212AQ96EL1 285 aa11.09□□□□□ -0.63
SRP54-208ENST00000555557 PCMTD1Q96MG8 357 aaPredicted RBP11.09□□□□□ -0.63
SRP54-208ENST00000555557 ZNF830Q96NB3 372 aaPredicted RBP11.09□□□□□ -0.63
SRP54-208ENST00000555557 EIF2AQ9BY44 585 aaKnown RBP11.09□□□□□ -0.63
SRP54-208ENST00000555557 AGO3Q9H9G7 860 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms