RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 C9orf72Q96LT7 481 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 TMX2Q9Y320 296 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 GAKO14976 1311 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 GMNCA6NCL1 334 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 F5H423 210 aaPredicted RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 RPSAP08865 295 aaKnown RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 HOXA10P31260 410 aaPredicted RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 KRT17Q04695 432 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 PPP2R5CQ13362 524 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 NLRP14Q86W24 1093 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 DNAJC19Q96DA6 116 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 TEX13BQ9BXU2 312 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 PPP1R12CQ9BZL4 782 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 EHD4Q9H223 541 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 DCAF8L1A6NGE4 600 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 SGPL1O95470 568 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 INHBAP08476 426 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 PCK1P35558 622 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 SESN3P58005 492 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 LMNB2Q03252 620 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 MEA1Q16626 185 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 TRIM50Q86XT4 487 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 STMN2Q93045 179 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 GLIS2Q9BZE0 524 aaPredicted RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 DBR1Q9UK59 544 aaKnown RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 HEY1Q9Y5J3 304 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 MEIS2O14770 477 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 CA8P35219 290 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 IRX4P78413 519 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 IL9RQ01113 521 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 LRRC55Q6ZSA7 311 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 SREK1Q8WXA9 508 aaKnown RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 DHX38Q92620 1227 aaKnown RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 SYN2Q92777 582 aaPredicted RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 SLC35C1Q96A29 364 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 AKT1S1Q96B36 256 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 KLHL29Q96CT2 875 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 ACP6Q9NPH0 428 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 GINM1Q9NU53 330 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 PPP1R11O60927 126 aaPredicted RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 TROVE2P10155 538 aaKnown RBP eCLIP16.73■□□□□ 0.27
CUX1-211ENST00000546411 GMPSP49915 693 aaPredicted RBP16.73■□□□□ 0.27
CUX1-211ENST00000546411 ADCY2Q08462 1091 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 MMS22LQ6ZRQ5 1243 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 SRLQ86TD4 932 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 CCNYQ8ND76 341 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 LPAR1Q92633 364 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 SHISA4Q96DD7 197 aa16.73■□□□□ 0.27
CUX1-211ENST00000546411 PHF20L1A8MW92 1017 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 RASA4BC9J798 803 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 I3L4J1 428 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 RASA4O43374 803 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 LGSNQ5TDP6 509 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 SPATS2Q86XZ4 545 aaKnown RBP16.72■□□□□ 0.27
CUX1-211ENST00000546411 JAMLQ86YT9 394 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 LRRC71Q8N4P6 559 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 ZNF280CQ8ND82 737 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 MCF2LO15068 1137 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 EIF3DO15371 548 aaKnown RBP eCLIP16.72■□□□□ 0.27
CUX1-211ENST00000546411 DGAT1O75907 488 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 LDHAP00338 332 aaKnown RBP16.72■□□□□ 0.27
CUX1-211ENST00000546411 PBX1P40424 430 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 SLC15A2Q16348 729 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 WDR72Q3MJ13 1102 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 CREG2Q8IUH2 290 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 MDM1Q8TC05 714 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 PYROXD1Q8WU10 500 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 RSRC1Q96IZ7 334 aaKnown RBP16.72■□□□□ 0.27
CUX1-211ENST00000546411 GGPS1O95749 300 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 BRAFP15056 766 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 MAGEA9P43362 315 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 STAT5BP51692 787 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 GPS1Q13098 491 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 STYK1Q6J9G0 422 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 CCDC62Q6P9F0 684 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 ACSF2Q96CM8 615 aaPredicted RBP16.72■□□□□ 0.27
CUX1-211ENST00000546411 MKNK1Q9BUB5 465 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 CNOT10Q9H9A5 744 aaKnown RBP16.72■□□□□ 0.27
CUX1-211ENST00000546411 KCND1Q9NSA2 647 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 STK10O94804 968 aaKnown RBP16.72■□□□□ 0.27
CUX1-211ENST00000546411 FAM153BP0C7A2 387 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 TMEM253P0C7T8 217 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 MYBL2P10244 700 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 CDK17Q00537 523 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 CXCL9Q07325 125 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 KCNMA1Q12791 1236 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 GPR162Q16538 588 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 FAM153CQ494X1 144 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 ZNF449Q6P9G9 518 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 ATG4AQ8WYN0 398 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 WNT8AQ9H1J5 351 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 FAM153AQ9UHL3 310 aa16.72■□□□□ 0.27
CUX1-211ENST00000546411 CLNS1AP54105 237 aaKnown RBP16.71■□□□□ 0.27
CUX1-211ENST00000546411 NEDD9Q14511 834 aa16.71■□□□□ 0.27
CUX1-211ENST00000546411 LONRF1Q17RB8 773 aa16.71■□□□□ 0.27
CUX1-211ENST00000546411 OTOP1Q7RTM1 612 aa16.71■□□□□ 0.27
CUX1-211ENST00000546411 MAP7D3Q8IWC1 876 aa16.71■□□□□ 0.27
CUX1-211ENST00000546411 SCINQ9Y6U3 715 aa16.71■□□□□ 0.27
CUX1-211ENST00000546411 FRMD3A2A2Y4 597 aa16.71■□□□□ 0.27
CUX1-211ENST00000546411 SNX16P57768 344 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms