RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PCDHB8Q9UN66 801 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 SH3BP1Q9Y3L3 701 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 EBAG9O00559 213 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 URODP06132 367 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 NCOA4Q13772 614 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 MGAT5BQ3V5L5 792 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 FAM102AQ5T9C2 384 aaPredicted RBP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 CCDC13Q8IYE1 715 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 KLC2Q9H0B6 622 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 WDR35Q9P2L0 1181 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 PRG3Q9Y2Y8 225 aaPredicted RBP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 TRIM49BA6NDI0 452 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 H3BRB1 525 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 MSH4O15457 936 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 ZRANB2O95218 330 aaKnown RBP eCLIP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 FMR1NBQ8N0W7 255 aaPredicted RBP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 VPS39Q96JC1 886 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 SH2D3AQ9BRG2 576 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 TUT1Q9H6E5 874 aaKnown RBP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 SLC15A5A6NIM6 579 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 CAPN2P17655 700 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 RAB27AP51159 221 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 DRAP1Q14919 205 aaPredicted RBP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 SNRNP35Q16560 246 aaKnown RBP15.16■□□□□ 0.02
COLCA1-204ENST00000540738 EPAS1Q99814 870 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 TLK1Q9UKI8 766 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 PTPN22Q9Y2R2 807 aa15.16■□□□□ 0.02
COLCA1-204ENST00000540738 TRIM49P0CI25 452 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 TRIM49CP0CI26 452 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CYP2C8P10632 490 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 SERPINB6P35237 376 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CCDC62Q6P9F0 684 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 NKX2-3Q8TAU0 364 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 FSD1LQ9BXM9 530 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ENTPD7Q9NQZ7 604 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CALCOCO1Q9P1Z2 691 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ZC3H4Q9UPT8 1303 aaKnown RBP15.15■□□□□ 0.02
COLCA1-204ENST00000540738 EXTL3O43909 919 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ZFXP17010 805 aaPredicted RBP15.15■□□□□ 0.02
COLCA1-204ENST00000540738 TMEM132BQ14DG7 1078 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ARHGAP18Q8N392 663 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ASIC4Q96FT7 647 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CHAMP1Q96JM3 812 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 PQBP1O60828 265 aaKnown RBP15.15■□□□□ 0.02
COLCA1-204ENST00000540738 PPFIA4O75335 1185 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 NDUFA10O95299 355 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 HSD17B4P51659 736 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ITPRIPL1Q6GPH6 555 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 KANSL3Q9P2N6 904 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 TROVE2P10155 538 aaKnown RBP eCLIP15.15■□□□□ 0.02
COLCA1-204ENST00000540738 STX2P32856 288 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 SOX5P35711 763 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CCDC15Q0P6D6 951 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CAPN12Q6ZSI9 719 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 NOP9Q86U38 636 aaKnown RBP15.15■□□□□ 0.02
COLCA1-204ENST00000540738 TLK2Q86UE8 772 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 EDEM3Q9BZQ6 932 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 UNC45AQ9H3U1 944 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 GAKO14976 1311 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CHGBP05060 677 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 ACADSBP45954 432 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CYP4A22Q5TCH4 519 aa15.15■□□□□ 0.02
COLCA1-204ENST00000540738 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.15■□□□□ 0.02
COLCA1-204ENST00000540738 CREB3O43889 395 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 NME3Q13232 169 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 SPDYE1Q8NFV5 336 aaPredicted RBP15.14■□□□□ 0.01
COLCA1-204ENST00000540738 AFAP1L1Q8TED9 768 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 HDAC11Q96DB2 347 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 MMTAG2Q9BU76 263 aaKnown RBP15.14■□□□□ 0.01
COLCA1-204ENST00000540738 NAMPTP43490 491 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 E2F5Q15329 346 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 CRY2Q49AN0 593 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 NT5C1AQ9BXI3 368 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 TBC1D12O60347 775 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 AMHP03971 560 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 KLRC1P26715 233 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 CASP1P29466 404 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 NPEPPSP55786 919 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 EDRF1Q3B7T1 1238 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 ANKRD20A3Q5VUR7 823 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 PDIK1LQ8N165 341 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 PDCD6IPQ8WUM4 868 aaKnown RBP15.14■□□□□ 0.01
COLCA1-204ENST00000540738 MID2Q9UJV3 735 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 COL3A1P02461 1466 aaPredicted RBP15.14■□□□□ 0.01
COLCA1-204ENST00000540738 SNX1Q13596 522 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 ACVR2BQ13705 512 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 TTC23LQ6PF05 361 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 PGBD3Q8N328 593 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 BCL2L12Q9HB09 334 aa15.14■□□□□ 0.01
COLCA1-204ENST00000540738 DDX56Q9NY93 547 aaKnown RBP15.14■□□□□ 0.01
COLCA1-204ENST00000540738 PHLPP1O60346 1717 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 NFIBO00712 420 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 PAPOLAP51003 745 aaKnown RBP15.13■□□□□ 0.01
COLCA1-204ENST00000540738 GUCY2FP51841 1108 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 MORC4Q8TE76 937 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 AK9Q5TCS8 1911 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 EGFRP00533 1210 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 LCP1P13796 627 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 ZNF235Q14590 738 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 CAMKK2Q96RR4 588 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms