RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 MB21D1Q8N884 522 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF280CQ8ND82 737 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 MGARPQ8TDB4 240 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 XAGE3Q8WTP9 111 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 LPIN2Q92539 896 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 EGLN2Q96KS0 407 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PRICKLE1Q96MT3 831 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ECSITQ9BQ95 431 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ERP44Q9BS26 406 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 CRNKL1Q9BZJ0 848 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 EPB41L4BQ9H329 900 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 TLE6Q9H808 572 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 KIAA1257Q9ULG3 409 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 COQ6Q9Y2Z9 468 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 RBMX2Q9Y388 322 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF330Q9Y3S2 320 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 TELO2Q9Y4R8 837 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 NR2E3Q9Y5X4 410 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF536O15090 1300 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 RGS16O15492 202 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 RNF113AO15541 343 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 DAPK3O43293 454 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 XPOTO43592 962 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 CYTH3O43739 400 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 DKC1O60832 514 aaKnown RBP eCLIP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 STAM2O75886 525 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 CBX6O95503 412 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 LDHBP07195 334 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PIM1P11309 404 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 HOXD13P35453 343 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 IL23RQ5VWK5 629 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 CROCCP3Q8IVE0 287 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 RAVER1Q8IY67 606 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ANKRD13CQ8N6S4 541 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 DDHD1Q8NEL9 900 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PPP1R14CQ8TAE6 165 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 COX4I2Q96KJ9 171 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 MIPEPQ99797 713 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 VTA1Q9NP79 307 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 TMEM59LQ9UK28 342 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PDS5AQ29RF7 1337 aaKnown RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 A0A088AWK7 358 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC160A6NGH7 325 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 TRAFD1O14545 582 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 RCVRNP35243 200 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 MXI1P50539 228 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 BCAP31P51572 246 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 KCNMA1Q12791 1236 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 MKRN3Q13064 507 aaKnown RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 ACVR2BQ13705 512 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 PRKG1Q13976 671 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 EPHA10Q5JZY3 1008 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 CHST3Q7LGC8 479 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 DCLK2Q8N568 766 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 USP38Q8NB14 1042 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC85AQ96PX6 553 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 UIMC1Q96RL1 719 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 SEZ6LQ9BYH1 1024 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 TTYH3Q9C0H2 523 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 RBM38Q9H0Z9 239 aaKnown RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 ARMC7Q9H6L4 198 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 ZNHIT2Q9UHR6 403 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 CHKBQ9Y259 395 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 UTP11Q9Y3A2 253 aaKnown RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 RREB1Q92766 1687 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 A0A1W2PQC6 194 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 PI4KAP2A4QPH2 592 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 FAM196BA6NMK8 535 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 LGALS16A8MUM7 142 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 DDX3XO00571 662 aaKnown RBP eCLIP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 AGTP01019 485 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 TFPTP0C1Z6 253 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 PABPC1P11940 636 aaKnown RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 GNA11P29992 359 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 SLC5A2P31639 672 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 RASSF2P50749 326 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 GPC3P51654 580 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 ZBTB17Q13105 803 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 PPP2R5BQ15173 497 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 SPDYCQ5MJ68 293 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 GJC2Q5T442 439 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 TMTC4Q5T4D3 741 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 AACSQ86V21 672 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 SFR1Q86XK3 245 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 PI4KAP1Q8N8J0 262 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 ARHGEF2Q92974 986 aaKnown RBP10.08□□□□□ -0.8
CLIP1-214ENST00000540539 TXLNGYQ9BZA5 131 aa10.08□□□□□ -0.8
CLIP1-214ENST00000540539 CNTNAP4Q9C0A0 1308 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC169A6NNP5 214 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 BUB1O43683 1085 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 EYA4O95677 639 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 DDX58O95786 925 aaKnown RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 NUDT17P0C025 328 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 CHRNB1P11230 501 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 IL6STP40189 918 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 PRKCIP41743 596 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 ACADSBP45954 432 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 HSD17B4P51659 736 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 POLGP54098 1239 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 TUBA4AP68366 448 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms