RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PBKQ96KB5 322 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 ADAM33Q9BZ11 813 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 POLR3FQ9H1D9 316 aaPredicted RBP18.21■□□□□ 0.51
USP28-208ENST00000540438 XPNPEP1Q9NQW7 623 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 NOVA2Q9UNW9 492 aaKnown RBP18.21■□□□□ 0.51
USP28-208ENST00000540438 C10orf71Q711Q0 1435 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 PTPRJQ12913 1337 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 GTPBP10A4D1E9 387 aaKnown RBP18.2■□□□□ 0.5
USP28-208ENST00000540438 OPA1O60313 960 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 PTPRAP18433 802 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 PSMC4P43686 418 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 NLRP11P59045 1033 aaKnown RBP18.2■□□□□ 0.5
USP28-208ENST00000540438 MTM1Q13496 603 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 CCDC38Q502W7 563 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 TTC27Q6P3X3 843 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 MKNK1Q9BUB5 465 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 CCDC113Q9H0I3 377 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 TMEM206Q9H813 350 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 PSD3Q9NYI0 1048 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 SUCLA2Q9P2R7 463 aaPredicted RBP18.2■□□□□ 0.5
USP28-208ENST00000540438 NENFQ9UMX5 172 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 UMODL1Q5DID0 1318 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 CLDN3O15551 220 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 LIG3P49916 1009 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 SMTNP53814 917 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 DR1Q01658 176 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 ITIH3Q06033 890 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 PPATQ06203 517 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 PPP2R5AQ15172 486 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 SRLQ86TD4 932 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 FBXO25Q8TCJ0 367 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 ZNF516Q92618 1163 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 SYT11Q9BT88 431 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 MOV10L1Q9BXT6 1211 aaKnown RBP18.2■□□□□ 0.5
USP28-208ENST00000540438 TBC1D22BQ9NU19 505 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 TRPC6Q9Y210 931 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 STK24Q9Y6E0 443 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 RPTORQ8N122 1335 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 ANKRD62A6NC57 917 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 FGFR4P22455 802 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 ACTR2P61160 394 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 FMO1Q01740 532 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 PPFIA1Q13136 1202 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 R3HDM1Q15032 1099 aaKnown RBP18.2■□□□□ 0.5
USP28-208ENST00000540438 ZNF280CQ8ND82 737 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 NLGN2Q8NFZ4 835 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 ACTRT1Q8TDG2 376 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 SPIRE2Q8WWL2 714 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 CAVIN3Q969G5 261 aa18.2■□□□□ 0.5
USP28-208ENST00000540438 TARS2Q9BW92 718 aaKnown RBP18.2■□□□□ 0.5
USP28-208ENST00000540438 NDUFAB1O14561 156 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 CTNND1O60716 968 aaKnown RBP18.19■□□□□ 0.5
USP28-208ENST00000540438 EDN1P05305 212 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 GTF2BQ00403 316 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 KRT71Q3SY84 523 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 VSIG10LQ86VR7 867 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 ISCUQ9H1K1 167 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 CYP11B1P15538 503 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 NR1D1P20393 614 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 IFFO1Q0D2I5 559 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 ORC1Q13415 861 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 HP1BP3Q5SSJ5 553 aaPredicted RBP18.19■□□□□ 0.5
USP28-208ENST00000540438 TREML2Q5T2D2 321 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 C10orf76Q5T2E6 689 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 TAS1R3Q7RTX0 852 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 SLFN11Q7Z7L1 901 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 ANKRD35Q8N283 1001 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 ZBED3Q96IU2 234 aaPredicted RBP18.19■□□□□ 0.5
USP28-208ENST00000540438 UTP11Q9Y3A2 253 aaKnown RBP18.19■□□□□ 0.5
USP28-208ENST00000540438 GRIN2DO15399 1336 aa18.19■□□□□ 0.5
USP28-208ENST00000540438 PGK2P07205 417 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 CD58P19256 250 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 ZNF564Q8TBZ8 553 aaPredicted RBP18.18■□□□□ 0.5
USP28-208ENST00000540438 JPH1Q9HDC5 661 aaPredicted RBP18.18■□□□□ 0.5
USP28-208ENST00000540438 RAB20Q9NX57 234 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 ZNF214Q9UL59 606 aaPredicted RBP18.18■□□□□ 0.5
USP28-208ENST00000540438 MYO1FO00160 1098 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 POLGP54098 1239 aaPredicted RBP18.18■□□□□ 0.5
USP28-208ENST00000540438 GPC5P78333 572 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 GLE1Q53GS7 698 aaKnown RBP18.18■□□□□ 0.5
USP28-208ENST00000540438 CCDC105Q8IYK2 499 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 SYCE1Q8N0S2 351 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 SH3GL2Q99962 352 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 HERPUD2Q9BSE4 406 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 TCHPQ9BT92 498 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 CWC15Q9P013 229 aaKnown RBP18.18■□□□□ 0.5
USP28-208ENST00000540438 RNF14Q9UBS8 474 aa18.18■□□□□ 0.5
USP28-208ENST00000540438 SRGAP2CP0DJJ0 459 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 LIG4P49917 911 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 ZNF844Q08AG5 666 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 KIF22Q14807 665 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 KRT39Q6A163 491 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 TRAPPC12Q8WVT3 735 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 LPAR1Q92633 364 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 HAPLN2Q9GZV7 340 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 MLXIPLQ9NP71 852 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 CNOT8Q9UFF9 292 aaKnown RBP18.17■□□□□ 0.5
USP28-208ENST00000540438 FEZ2Q9UHY8 353 aaPredicted RBP18.17■□□□□ 0.5
USP28-208ENST00000540438 E7EVH7 732 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 C4orf19Q8IY42 314 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms