RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 C22orf23Q9BZE7 217 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 GPR62Q9BZJ7 368 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 DHX33Q9H6R0 707 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 SH3GLB2Q9NR46 395 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 VPS54Q9P1Q0 977 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 CDH7Q9ULB5 785 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 MTF2Q9Y483 593 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 PPME1Q9Y570 386 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 ACACBO00763 2458 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 DKC1O60832 514 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 TDP2O95551 362 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 AXLP30530 894 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 MLH1P40692 756 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 RFC5P40937 340 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 MAGEA9P43362 315 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 QARSP47897 775 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 SCNN1GP51170 649 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 NLRP5P59047 1200 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 NCBP1Q09161 790 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 UBXN2BQ14CS0 331 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 PCBP1Q15365 356 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 MLF2Q15773 248 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 NTRK3Q16288 839 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 FUT10Q6P4F1 479 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 RSPO2Q6UXX9 243 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 MTSS1LQ765P7 747 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 GRASPQ7Z6J2 395 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 ZBTB44Q8NCP5 570 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 ETNPPLQ8TBG4 499 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 CCDC51Q96ER9 411 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 CEP170P1Q96L14 293 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 ZFP42Q96MM3 310 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 EIF2AQ9BY44 585 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 RNF26Q9BY78 433 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 ZSCAN32Q9NX65 697 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 GIT1Q9Y2X7 761 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 HES2Q9Y543 173 aa12.98□□□□□ -0.33
CLSTN3-209ENST00000539982 EML1O00423 815 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 LILRB5O75023 590 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 ERLIN2O94905 339 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 HNRNPA1P09651 372 aaKnown RBP eCLIP12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 RPL17P18621 184 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 PFKPQ01813 784 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 LMNB2Q03252 620 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 ZBTB41Q5SVQ8 909 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 NOTUMQ6P988 496 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 MOXD1Q6UVY6 613 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 Q6ZUG5 572 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 FERMT3Q86UX7 667 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 RNF149Q8NC42 400 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 TCP11Q8WWU5 503 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 NELL1Q92832 810 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 FGF13Q92913 245 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 BRF1Q92994 677 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 NELL2Q99435 816 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 SLC26A6Q9BXS9 759 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 CSRNP2Q9H175 543 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 EPC1Q9H2F5 836 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 ADAM28Q9UKQ2 775 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 MIA3Q5JRA6 1907 aa12.97□□□□□ -0.33
CLSTN3-209ENST00000539982 NID2Q14112 1375 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 TBC1D4O60343 1298 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 TSPAN1O60635 241 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 TADA2AO75478 443 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 P4HBP07237 508 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 IFNAR1P17181 557 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 NTHL1P78549 312 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 HACE1Q8IYU2 909 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 GSTCDQ8NEC7 633 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 CLDN23Q96B33 292 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 RTKNQ9BST9 563 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 LTB4R2Q9NPC1 389 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 FBXW11Q9UKB1 542 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 CDV3Q9UKY7 258 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 PCDHA4Q9UN74 947 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 SMG5Q9UPR3 1016 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 SPTBN2O15020 2390 aa12.96□□□□□ -0.33
CLSTN3-209ENST00000539982 MYH15Q9Y2K3 1946 aa12.96□□□□□ -0.34
CLSTN3-209ENST00000539982 DOCK6Q96HP0 2047 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 DCDC2BA2VCK2 349 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 NCAM2O15394 837 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 CPA1P15085 419 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 CD72P21854 359 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 TGM1P22735 817 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 HOXA9P31269 272 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 PTENP60484 403 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 POU5F1BQ06416 359 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 PPP2R5CQ13362 524 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 MXD4Q14582 209 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 PPM1LQ5SGD2 360 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 LIN9Q5TKA1 542 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 PRSS55Q6UWB4 352 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 OTUD6AQ7L8S5 288 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 C4orf19Q8IY42 314 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 FBXL16Q8N461 479 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 CPB2Q96IY4 423 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 CLSTN3Q9BQT9 956 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 PHF20Q9BVI0 1012 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 APOL6Q9BWW8 343 aa12.95□□□□□ -0.34
CLSTN3-209ENST00000539982 TRIM6Q9C030 488 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms