RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ZNF720Q7Z2F6 126 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 OLIG1Q8TAK6 271 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 TBC1D16Q8TBP0 767 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 FBF1Q8TES7 1133 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ATG4AQ8WYN0 398 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 POLR3CQ9BUI4 534 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-237ENST00000539504 PLVAPQ9BX97 442 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CCDC134Q9H6E4 229 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 PLIN4Q96Q06 1357 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 UBAP1LF5GYI3 381 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CYP26A1O43174 497 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 RTN2O75298 545 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 GDF11O95390 407 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CHKAP35790 457 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ICA1Q05084 483 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CYFIP1Q7L576 1253 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 NAV1Q8NEY1 1877 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 MBOAT7Q96N66 472 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 DNAJC18Q9H819 358 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ZMYM2Q9UBW7 1377 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 TISP43B9A030 160 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 PDE6BP35913 854 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 SREBF1P36956 1147 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 SSR1P43307 286 aaKnown RBP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 RRP1BQ14684 758 aaKnown RBP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 NAIF1Q69YI7 327 aaPredicted RBP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 FITM2Q8N6M3 262 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 MRRFQ96E11 262 aaKnown RBP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 PWWP2AQ96N64 755 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 RPS6KC1Q96S38 1066 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 PLCD4Q9BRC7 762 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 TMEM109Q9BVC6 243 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 VAV3Q9UKW4 847 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 SLITRK3O94933 977 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 GJC1P36383 396 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 SETDB1Q15047 1291 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 DOK7Q18PE1 504 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 ZFYVE27Q5T4F4 411 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 C1orf186Q6ZWK4 172 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 KIAA0825Q8IV33 1275 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 RBM17Q96I25 401 aaKnown RBP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 CCDC17Q96LX7 622 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 SERPINB12Q96P63 405 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 SYT11Q9BT88 431 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 PITPNM3Q9BZ71 974 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 ANAPC5Q9UJX4 755 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 F5H6K3 240 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 ATF2P15336 505 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 PEX5P50542 639 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 TAF11Q15544 211 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 MFSD5Q6N075 450 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 CYP4F22Q6NT55 531 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 BZW1Q7L1Q6 419 aaKnown RBP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 DCAF4Q8WV16 495 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 RMDN2Q96LZ7 410 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 PCDHB18PQ96TA0 734 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 FAM118BQ9BPY3 351 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 CCDC77Q9BR77 488 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.05□□□□□ -0.48
SYNE1-237ENST00000539504 LAMB2P55268 1798 aa12.05□□□□□ -0.48
SYNE1-237ENST00000539504 HIP1RO75146 1068 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ATP2A2P16615 1042 aaKnown RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 VAMP7P51809 220 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 BNIP1Q12981 228 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 TMED2Q15363 201 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 VSTM1Q6UX27 236 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ARHGEF18Q6ZSZ5 1173 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ZFPM1Q8IX07 1006 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 CCDC127Q96BQ5 260 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 FAXDC2Q96IV6 333 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 BATF3Q9NR55 127 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ABCA3Q99758 1704 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 FRMPD4Q14CM0 1322 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 GOLGA8IPA6NC78 632 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 GOLGA8JA6NMD2 632 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 GAS8O95995 478 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ITGA8P53708 1063 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 SYDE2Q5VT97 1194 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 CDC42EP5Q6NZY7 148 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 C15orf52Q6ZUT6 534 aaKnown RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 L3MBTL3Q96JM7 780 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 C9orf72Q96LT7 481 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 HEMGNQ9BXL5 484 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ZC3H12CQ9C0D7 883 aaKnown RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 RXFP1Q9HBX9 757 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 DDX60LQ5H9U9 1706 aaKnown RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 MXI1P50539 228 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 PPP3CAQ08209 521 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 CAPRIN2Q6IMN6 1127 aaKnown RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 PRR5LQ6MZQ0 368 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 NOP9Q86U38 636 aaKnown RBP12.04□□□□□ -0.48
SYNE1-237ENST00000539504 SLC17A8Q8NDX2 589 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 CKAP2Q8WWK9 683 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ELMO3Q96BJ8 720 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 NACC1Q96RE7 527 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 ZBTB21Q9ULJ3 1066 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 MAST2Q6P0Q8 1798 aa12.04□□□□□ -0.48
SYNE1-237ENST00000539504 TOM1O60784 492 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 CHRM1P11229 460 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-237ENST00000539504 RC3H1Q5TC82 1133 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms