RNA–Protein interactions for RNA: ENST00000531131.1

NXF1-208, Transcript of nuclear RNA export factor 1, human

TSL 2 BASIC

Gene NXF1, Length 1,023 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-208	ENST00000531131	TRIM9	Q9C026	710 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	NXF3	Q9H4D5	531 aa	Known RBP	12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	PTPRH	Q9HD43	1115 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	PANK4	Q9NVE7	773 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	CHMP5	Q9NZZ3	219 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	TBX20	Q9UMR3	447 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	PLAGL2	Q9UPG8	496 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	HPSE	Q9Y251	543 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	KIAA1671	Q9BY89	1806 aa		12.52	□□□□□ -0.41
NXF1-208	ENST00000531131	GOLGA6L4	A6NEF3	574 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	ARL5C	A6NH57	179 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MEIS3P2	A8K0S8	358 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	RFXAP	O00287	272 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	PIGR	P01833	764 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	EDN1	P05305	212 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MYL1	P05976	194 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MCF2	P10911	925 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	IDE	P14735	1019 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	PFKFB1	P16118	471 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	PROZ	P22891	400 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	KYAT1	Q16773	422 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	ZNF568	Q3ZCX4	644 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	LONRF3	Q496Y0	759 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	HERC4	Q5GLZ8	1057 aa	Predicted RBP	12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	EEF1DP3	Q658K8	133 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	KCNT2	Q6UVM3	1135 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MPZL3	Q6UWV2	235 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	CDR2L	Q86X02	465 aa	Predicted RBP	12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	SFR1	Q86XK3	245 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	GDPD5	Q8WTR4	605 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MRPL38	Q96DV4	380 aa	Known RBP	12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	CCDC34	Q96HJ3	373 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	CHAMP1	Q96JM3	812 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	ZNF558	Q96NG5	402 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	TCHP	Q9BT92	498 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MRPL44	Q9H9J2	332 aa	Known RBP	12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	TBC1D13	Q9NVG8	400 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	INPP5F	Q9Y2H2	1132 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	HES2	Q9Y543	173 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	MTCH2	Q9Y6C9	303 aa		12.51	□□□□□ -0.41
NXF1-208	ENST00000531131	TDRD15	B5MCY1	1934 aa	Known RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	PRRC2B	Q5JSZ5	2229 aa	Known RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131		A0A1B0GVL5	298 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	PVALEF	A0A1B0GWK0	134 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	CLDN3	O15551	220 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	MLH1	P40692	756 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	GRM5	P41594	1212 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	SYK	P43405	635 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	LIG4	P49917	911 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	PLCB3	Q01970	1234 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	KRT17	Q04695	432 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	STXBP4	Q6ZWJ1	553 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	MAP4K3	Q8IVH8	894 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	THNSL1	Q8IYQ7	743 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	KLHL23	Q8NBE8	558 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	MAFA	Q8NHW3	353 aa	Predicted RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	MRPS27	Q92552	414 aa	Known RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	BICD1	Q96G01	975 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	FAM193B	Q96PV7	902 aa	Predicted RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	GAD1	Q99259	594 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	TMEM175	Q9BSA9	504 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	CCDC94	Q9BW85	323 aa	Predicted RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	APOL6	Q9BWW8	343 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	STRA6	Q9BX79	667 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	RNF39	Q9H2S5	420 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	TOPORS	Q9NS56	1045 aa	Predicted RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	SPG21	Q9NZD8	308 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	STK39	Q9UEW8	545 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	PARP2	Q9UGN5	583 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	PUF60	Q9UHX1	559 aa	Known RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	EXOC7	Q9UPT5	735 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	LZTS1	Q9Y250	596 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	USP20	Q9Y2K6	914 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	PCDHB13	Q9Y5F0	798 aa		12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	COL4A4	P53420	1690 aa	Predicted RBP	12.5	□□□□□ -0.41
NXF1-208	ENST00000531131	ABLIM1	O14639	778 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	HNRNPDL	O14979	420 aa	Known RBP	12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	ACTN4	O43707	911 aa	Known RBP	12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	NR1I2	O75469	434 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	PPP1R37	O75864	691 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	FGF18	O76093	207 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	ALDH2	P05091	517 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	ITGB1	P05556	798 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	AKAP5	P24588	427 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	NMT1	P30419	496 aa	Known RBP	12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	NDUFA8	P51970	172 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	YARS	P54577	528 aa	Known RBP	12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	BCAR1	P56945	870 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	ASIC1	P78348	528 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	MCL1	Q07820	350 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	GRIK3	Q13003	919 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	NOLC1	Q14978	699 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	SLFN12L	Q6IEE8	588 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	PDE12	Q6L8Q7	609 aa	Known RBP	12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	FSIP1	Q8NA03	581 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	SPPL3	Q8TCT6	385 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	STAM	Q92783	540 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	RPS6KC1	Q96S38	1066 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	CDT1	Q9H211	546 aa		12.49	□□□□□ -0.41
NXF1-208	ENST00000531131	NRDE2	Q9H7Z3	1164 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms