RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 RNF169Q8NCN4 708 aa23.35■■□□□ 1.33
CAPN1-220ENST00000530567 CCDC47Q96A33 483 aaKnown RBP23.35■■□□□ 1.33
CAPN1-220ENST00000530567 ZNF689Q96CS4 500 aaPredicted RBP23.35■■□□□ 1.33
CAPN1-220ENST00000530567 PBX4Q9BYU1 374 aa23.35■■□□□ 1.33
CAPN1-220ENST00000530567 TRIM6Q9C030 488 aaPredicted RBP23.35■■□□□ 1.33
CAPN1-220ENST00000530567 LRFN2Q9ULH4 789 aa23.35■■□□□ 1.33
CAPN1-220ENST00000530567 STYXL1Q9Y6J8 313 aa23.35■■□□□ 1.33
CAPN1-220ENST00000530567 MCF2P10911 925 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 MYOGP15173 224 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 ADSSP30520 456 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 SMAD3P84022 425 aaKnown RBP23.34■■□□□ 1.33
CAPN1-220ENST00000530567 NOLC1Q14978 699 aaKnown RBP eCLIP23.34■■□□□ 1.33
CAPN1-220ENST00000530567 ZBTB33Q86T24 672 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 TMEM206Q9H813 350 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 RMND1Q9NWS8 449 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 MAN1B1Q9UKM7 699 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 EXOC7Q9UPT5 735 aa23.34■■□□□ 1.33
CAPN1-220ENST00000530567 YBX2Q9Y2T7 364 aaKnown RBP23.34■■□□□ 1.33
CAPN1-220ENST00000530567 A0A0B4J269 797 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 LCHNA4D1U4 455 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 TLL1O43897 1013 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 FAM189A1O60320 539 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 MBD3O95983 291 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 NELFCDQ8IXH7 590 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 SMYD4Q8IYR2 804 aaPredicted RBP23.33■■□□□ 1.33
CAPN1-220ENST00000530567 SP7Q8TDD2 431 aaPredicted RBP23.33■■□□□ 1.33
CAPN1-220ENST00000530567 RAD9AQ99638 391 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 NUP62CLQ9H1M0 184 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 RNF216Q9NWF9 866 aaPredicted RBP23.33■■□□□ 1.33
CAPN1-220ENST00000530567 PCDHA11Q9Y5I1 949 aa23.33■■□□□ 1.33
CAPN1-220ENST00000530567 SOX1O00570 391 aaPredicted RBP23.33■■□□□ 1.32
CAPN1-220ENST00000530567 CLDN3O15551 220 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 TGFB1I1O43294 461 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 ARHGEF15O94989 841 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 HARSP12081 509 aaKnown RBP23.33■■□□□ 1.32
CAPN1-220ENST00000530567 TMEM192Q8IY95 271 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 PGBD4Q96DM1 585 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 YME1L1Q96TA2 773 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 TCHPQ9BT92 498 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 ZBED2Q9BTP6 218 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 KIAA1468Q9P260 1216 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 INSL6Q9Y581 213 aa23.33■■□□□ 1.32
CAPN1-220ENST00000530567 ITGA4P13612 1032 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 BMP6P22004 513 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 AKAP5P24588 427 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 GRM5P41594 1212 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 ZNF658Q5TYW1 1059 aaPredicted RBP23.32■■□□□ 1.32
CAPN1-220ENST00000530567 APBB1IPQ7Z5R6 666 aaPredicted RBP23.32■■□□□ 1.32
CAPN1-220ENST00000530567 SYCP3Q8IZU3 236 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 HELQQ8TDG4 1101 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 CASD1Q96PB1 797 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 APOL6Q9BWW8 343 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 RSAD1Q9HA92 442 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 SNTG2Q9NY99 539 aa23.32■■□□□ 1.32
CAPN1-220ENST00000530567 MEFVO15553 781 aaPredicted RBP23.31■■□□□ 1.32
CAPN1-220ENST00000530567 HOXA2O43364 376 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 OFD1O75665 1012 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 RECQL4O94761 1208 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 AFF1P51825 1210 aaKnown RBP23.31■■□□□ 1.32
CAPN1-220ENST00000530567 KNOP1Q1ED39 458 aaKnown RBP23.31■■□□□ 1.32
CAPN1-220ENST00000530567 ZBTB41Q5SVQ8 909 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 TMEM117Q9H0C3 514 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 GBP3Q9H0R5 595 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 KCTD10Q9H3F6 313 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 MAPK8IP1Q9UQF2 711 aa23.31■■□□□ 1.32
CAPN1-220ENST00000530567 INPPL1O15357 1258 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 CA3P07451 260 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 DNAJB2P25686 324 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 MORC3Q14149 939 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 RAB30Q15771 203 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 PAN2Q504Q3 1202 aaKnown RBP23.3■■□□□ 1.32
CAPN1-220ENST00000530567 SEZ6Q53EL9 994 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 HABP4Q5JVS0 413 aaKnown RBP23.3■■□□□ 1.32
CAPN1-220ENST00000530567 ISM2Q6H9L7 571 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 SLFN12LQ6IEE8 588 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 THNSL1Q8IYQ7 743 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 CMTR2Q8IYT2 770 aaKnown RBP23.3■■□□□ 1.32
CAPN1-220ENST00000530567 HACE1Q8IYU2 909 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 GUF1Q8N442 669 aaKnown RBP23.3■■□□□ 1.32
CAPN1-220ENST00000530567 CBWD1Q9BRT8 395 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 CXCL16Q9H2A7 254 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 AGPAT3Q9NRZ7 376 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 GIT1Q9Y2X7 761 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 CHD9Q3L8U1 2897 aa23.3■■□□□ 1.32
CAPN1-220ENST00000530567 TBKBP1A7MCY6 615 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 BIN1O00499 593 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 OGTO15294 1046 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 LINC00271P0C7V0 271 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 MLH1P40692 756 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 MATR3P43243 847 aaKnown RBP eCLIP23.29■■□□□ 1.32
CAPN1-220ENST00000530567 COBLL1Q53SF7 1204 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 GLB1LQ6UWU2 654 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 GSTCDQ8NEC7 633 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 POMGNT1Q8WZA1 660 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 ZFP42Q96MM3 310 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 GAD1Q99259 594 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 MSTO1Q9BUK6 570 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 UBN1Q9NPG3 1134 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 HCSTQ9UBK5 93 aa23.29■■□□□ 1.32
CAPN1-220ENST00000530567 GARTP22102 1010 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms