RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 ZNF507Q8TCN5 953 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 SCFD1Q8WVM8 642 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 TOP1MTQ969P6 601 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 NUP62CLQ9H1M0 184 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 RMND1Q9NWS8 449 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 ANKFY1Q9P2R3 1169 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 LRFN2Q9ULH4 789 aa15.35■□□□□ 0.05
USF1-209ENST00000529476 ZNF623O75123 536 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 TOM1L1O75674 476 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 PROZP22891 400 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 HOXD11P31277 338 aaPredicted RBP15.34■□□□□ 0.05
USF1-209ENST00000529476 ZNF568Q3ZCX4 644 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 ISM2Q6H9L7 571 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 MPZL3Q6UWV2 235 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 ZNF598Q86UK7 904 aaKnown RBP15.34■□□□□ 0.05
USF1-209ENST00000529476 HERC6Q8IVU3 1022 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 SYCP3Q8IZU3 236 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 PHOSPHO2Q8TCD6 241 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 LPPQ93052 612 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 ADPGKQ9BRR6 497 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 TCHPQ9BT92 498 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 TRIM6Q9C030 488 aaPredicted RBP15.34■□□□□ 0.05
USF1-209ENST00000529476 HAPLN2Q9GZV7 340 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 CDT1Q9H211 546 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 NXF3Q9H4D5 531 aaKnown RBP15.34■□□□□ 0.05
USF1-209ENST00000529476 TMEM161AQ9NX61 479 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 MAN1B1Q9UKM7 699 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 EXOC7Q9UPT5 735 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 HES2Q9Y543 173 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 IPPQ9Y573 584 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 PCDHB7Q9Y5E2 793 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 ZMYM2Q9UBW7 1377 aa15.34■□□□□ 0.05
USF1-209ENST00000529476 COL4A6Q14031 1691 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 MEIS3P2A8K0S8 358 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 BIN1O00499 593 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 STAG3L1P0CL83 205 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 FGFR1P11362 822 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 HARSP12081 509 aaKnown RBP15.33■□□□□ 0.04
USF1-209ENST00000529476 SKIP12755 728 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 MATR3P43243 847 aaKnown RBP eCLIP15.33■□□□□ 0.04
USF1-209ENST00000529476 GATMP50440 423 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 RABGGTBP53611 331 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 BMT2Q1RMZ1 405 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 DCAF4L1Q3SXM0 396 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 MRPL10Q7Z7H8 261 aaKnown RBP15.33■□□□□ 0.04
USF1-209ENST00000529476 SMYD4Q8IYR2 804 aaPredicted RBP15.33■□□□□ 0.04
USF1-209ENST00000529476 APOL6Q9BWW8 343 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 RNF39Q9H2S5 420 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 ELAC1Q9H777 363 aaKnown RBP15.33■□□□□ 0.04
USF1-209ENST00000529476 TMEM206Q9H813 350 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 KIAA1468Q9P260 1216 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 MAPK8IP1Q9UQF2 711 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 UBE4BO95155 1302 aa15.33■□□□□ 0.04
USF1-209ENST00000529476 FNDC1Q4ZHG4 1894 aaPredicted RBP15.33■□□□□ 0.04
USF1-209ENST00000529476 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.32■□□□□ 0.04
USF1-209ENST00000529476 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.32■□□□□ 0.04
USF1-209ENST00000529476 CLDN3O15551 220 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 GJB5O95377 273 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 EOMESO95936 686 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 MCF2P10911 925 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 MCL1Q07820 350 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 NOLC1Q14978 699 aaKnown RBP eCLIP15.32■□□□□ 0.04
USF1-209ENST00000529476 ZNF658Q5TYW1 1059 aaPredicted RBP15.32■□□□□ 0.04
USF1-209ENST00000529476 AGMOQ6ZNB7 445 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 CEP120Q8N960 986 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 ZBED2Q9BTP6 218 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 RNF19AQ9NV58 838 aa15.32■□□□□ 0.04
USF1-209ENST00000529476 A0A0B4J269 797 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 TGFB1I1O43294 461 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 DGKIO75912 1065 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 ITGA4P13612 1032 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 MYOGP15173 224 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 BMP6P22004 513 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 AKAP5P24588 427 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 ADSSP30520 456 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 PBX2P40425 430 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 OSTNP61366 133 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 MORC3Q14149 939 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 KNOP1Q1ED39 458 aaKnown RBP15.31■□□□□ 0.04
USF1-209ENST00000529476 SEZ6Q53EL9 994 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 CLLU1OSQ5K130 101 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 APBB1IPQ7Z5R6 666 aaPredicted RBP15.31■□□□□ 0.04
USF1-209ENST00000529476 TMEM192Q8IY95 271 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 THNSL1Q8IYQ7 743 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 PGBD4Q96DM1 585 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 GBP3Q9H0R5 595 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 RNF216Q9NWF9 866 aaPredicted RBP15.31■□□□□ 0.04
USF1-209ENST00000529476 SNTG2Q9NY99 539 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 STYXL1Q9Y6J8 313 aa15.31■□□□□ 0.04
USF1-209ENST00000529476 TLL1O43897 1013 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 PTMSP20962 102 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 PRCPP42785 496 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 HTRA4P83105 476 aaPredicted RBP15.3■□□□□ 0.04
USF1-209ENST00000529476 TRIP11Q15643 1979 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 ZBTB41Q5SVQ8 909 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 SLFN12LQ6IEE8 588 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 HACE1Q8IYU2 909 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 GUF1Q8N442 669 aaKnown RBP15.3■□□□□ 0.04
USF1-209ENST00000529476 HELQQ8TDG4 1101 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 PPM1EQ8WY54 764 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms