RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 DZANK1Q9NVP4 752 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 MARCH5Q9NX47 278 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 KCND2Q9NZV8 630 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 FAN1Q9Y2M0 1017 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 DENND4AQ7Z401 1863 aa17.33■□□□□ 0.37
HDAC4-213ENST00000496347 NRP1O14786 923 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 CLASP2O75122 1294 aaKnown RBP17.33■□□□□ 0.36
HDAC4-213ENST00000496347 HIP1RO75146 1068 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 GUCY2CP25092 1073 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 LLGL2Q6P1M3 1020 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 PPFIBP1Q86W92 1011 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 CDR2LQ86X02 465 aaPredicted RBP17.33■□□□□ 0.36
HDAC4-213ENST00000496347 GSTCDQ8NEC7 633 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 KHSRPQ92945 711 aaKnown RBP eCLIP17.33■□□□□ 0.36
HDAC4-213ENST00000496347 CDK5RAP3Q96JB5 506 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 HERC2P3Q9BVR0 1158 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 ARHGAP28Q9P2N2 729 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 PRG3Q9Y2Y8 225 aaPredicted RBP17.33■□□□□ 0.36
HDAC4-213ENST00000496347 CITO14578 2027 aa17.33■□□□□ 0.36
HDAC4-213ENST00000496347 MYH15Q9Y2K3 1946 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 E9PMD0 336 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 DCXO43602 365 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 CXCL14O95715 111 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 SOD2P04179 222 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 URODP06132 367 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 AKAP5P24588 427 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 CDC25AP30304 524 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 CBX2Q14781 532 aaPredicted RBP17.32■□□□□ 0.36
HDAC4-213ENST00000496347 TMEM119Q4V9L6 283 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 RINT1Q6NUQ1 792 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 SYCE2Q6PIF2 218 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 C1orf186Q6ZWK4 172 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 KCNK18Q7Z418 384 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 RNF168Q8IYW5 571 aaPredicted RBP17.32■□□□□ 0.36
HDAC4-213ENST00000496347 DAW1Q8N136 415 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 INTS4Q96HW7 963 aaKnown RBP17.32■□□□□ 0.36
HDAC4-213ENST00000496347 PHF7Q9BWX1 381 aaPredicted RBP17.32■□□□□ 0.36
HDAC4-213ENST00000496347 EMILIN2Q9BXX0 1053 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 EPHX3Q9H6B9 360 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 MRPL17Q9NRX2 175 aaKnown RBP17.32■□□□□ 0.36
HDAC4-213ENST00000496347 PARP2Q9UGN5 583 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 SSX2IPQ9Y2D8 614 aa17.32■□□□□ 0.36
HDAC4-213ENST00000496347 TRIP11Q15643 1979 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 VPS37CA5D8V6 355 aaPredicted RBP17.31■□□□□ 0.36
HDAC4-213ENST00000496347 TTLL13PA6NNM8 815 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 RECQL4O94761 1208 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 EFEMP2O95967 443 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 LIG1P18858 919 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 OR1G1P47890 313 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 NPTX2P47972 431 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 ITIH3Q06033 890 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 MAPK7Q13164 816 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 ZRSR1Q15695 479 aaKnown RBP17.31■□□□□ 0.36
HDAC4-213ENST00000496347 TMEM31Q5JXX7 168 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 ATF7IP2Q5U623 682 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 AUTS2Q8WXX7 1259 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 NECTIN4Q96NY8 510 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 S1PR5Q9H228 398 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 KCNG1Q9UIX4 513 aa17.31■□□□□ 0.36
HDAC4-213ENST00000496347 RBM19Q9Y4C8 960 aaKnown RBP17.31■□□□□ 0.36
HDAC4-213ENST00000496347 CCDC169A6NNP5 214 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 LOC730098B7Z3J9 87 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 K7ERI5 159 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 EDN1P05305 212 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 GLUD2P49448 558 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 PEX3P56589 373 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 TUSC3Q13454 348 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 CES5AQ6NT32 575 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 GPR65Q8IYL9 337 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 SYT2Q8N9I0 419 aaPredicted RBP17.3■□□□□ 0.36
HDAC4-213ENST00000496347 PNMA5Q96PV4 448 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 COLEC11Q9BWP8 271 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 MRPL4Q9BYD3 311 aaKnown RBP17.3■□□□□ 0.36
HDAC4-213ENST00000496347 TMEM134Q9H6X4 195 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 KMT5AQ9NQR1 393 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 TNFSF13BQ9Y275 285 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 PLXNA3P51805 1871 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 MUC6Q6W4X9 2439 aa17.3■□□□□ 0.36
HDAC4-213ENST00000496347 PDCD11Q14690 1871 aaKnown RBP17.29■□□□□ 0.36
HDAC4-213ENST00000496347 SF3B1O75533 1304 aaKnown RBP eCLIP17.29■□□□□ 0.363e-9■■■■■ 143.6
HDAC4-213ENST00000496347 GPR37L1O60883 481 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 LONP1P36776 959 aaKnown RBP17.29■□□□□ 0.36
HDAC4-213ENST00000496347 SLC12A3P55017 1021 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 HERC4Q5GLZ8 1057 aaPredicted RBP17.29■□□□□ 0.36
HDAC4-213ENST00000496347 EEF1DP3Q658K8 133 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 CABP7Q86V35 215 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 SLC22A17Q8WUG5 538 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 SPIRE2Q8WWL2 714 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 CALML4Q96GE6 196 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 ADAM7Q9H2U9 754 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 SFXN1Q9H9B4 322 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 C11orf16Q9NQ32 467 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 MIOSQ9NXC5 875 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 KLK14Q9P0G3 267 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 ADAM28Q9UKQ2 775 aa17.29■□□□□ 0.36
HDAC4-213ENST00000496347 C2orf16Q68DN1 1984 aa17.28■□□□□ 0.36
HDAC4-213ENST00000496347 K7ELQ4 463 aaPredicted RBP17.28■□□□□ 0.36
HDAC4-213ENST00000496347 PTGESO14684 152 aa17.28■□□□□ 0.36
HDAC4-213ENST00000496347 LILRB3O75022 631 aa17.28■□□□□ 0.36
HDAC4-213ENST00000496347 SSBP05455 408 aaKnown RBP eCLIP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms