RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	COL6A3	P12111	3177 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	GOLGA6L4	A6NEF3	574 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	ARL5C	A6NH57	179 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	NT5C1B-RDH14	C9J2C7	533 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024		H0YCG3	227 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024		H3BNC9	293 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	ZC3H11A	O75152	810 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	SLC34A2	O95436	690 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	RB1	P06400	928 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	LAG3	P18627	525 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	SCNN1G	P51170	649 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	NDUFA8	P51970	172 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	OSTN	P61366	133 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	ASIC1	P78348	528 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	AMPD3	Q01432	767 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	DCAF4L1	Q3SXM0	396 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	KCNT2	Q6UVM3	1135 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	ZNF280B	Q86YH2	543 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	CCDC65	Q8IXS2	484 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	THNSL1	Q8IYQ7	743 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	MAFA	Q8NHW3	353 aa	Predicted RBP	10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	HPS3	Q969F9	1004 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	ZFP42	Q96MM3	310 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	ZNF558	Q96NG5	402 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	FAM193B	Q96PV7	902 aa	Predicted RBP	10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	C11orf84	Q9BUA3	381 aa	Predicted RBP	10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	MRPL9	Q9BYD2	267 aa	Known RBP	10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	LRRC27	Q9C0I9	530 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	TNMD	Q9H2S6	317 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	CUEDC2	Q9H467	287 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	MRPL44	Q9H9J2	332 aa	Known RBP	10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	TBC1D13	Q9NVG8	400 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	KBTBD4	Q9NVX7	518 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	MIOS	Q9NXC5	875 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	CHMP5	Q9NZZ3	219 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	TBX20	Q9UMR3	447 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	TNFSF13B	Q9Y275	285 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	MTCH2	Q9Y6C9	303 aa		10.78	□□□□□ -0.68
CALD1-223	ENST00000496024	PLXNA4	Q9HCM2	1894 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	BRWD1	Q9NSI6	2320 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	C5orf67	F2Z3F1	127 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	HNRNPDL	O14979	420 aa	Known RBP	10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	RECQL4	O94761	1208 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	GCNT3	O95395	438 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	ITGB1	P05556	798 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	GAP43	P17677	238 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	SYK	P43405	635 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	LIG4	P49917	911 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	BCAR1	P56945	870 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	SEZ6	Q53EL9	994 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	MPZL3	Q6UWV2	235 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	CEP120	Q8N960	986 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	MRPS27	Q92552	414 aa	Known RBP	10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	RPS6KC1	Q96S38	1066 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	FIZ1	Q96SL8	496 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	PYM1	Q9BRP8	204 aa	Known RBP	10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	PLVAP	Q9BX97	442 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	TRIM9	Q9C026	710 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	CDT1	Q9H211	546 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	IKZF4	Q9H2S9	585 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	GOLPH3L	Q9H4A5	285 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	NRDE2	Q9H7Z3	1164 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	UBN1	Q9NPG3	1134 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	SEL1L	Q9UBV2	794 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	DNAJB4	Q9UDY4	337 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	PLAGL2	Q9UPG8	496 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	GIT1	Q9Y2X7	761 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	CIT	O14578	2027 aa		10.77	□□□□□ -0.69
CALD1-223	ENST00000496024	PRUNE2	Q8WUY3	3088 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024		A0A1W2PQ27	194 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024		A0A1W2PQ64	194 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024		A0A1W2PQD8	194 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	CLDN3	O15551	220 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	ACTN4	O43707	911 aa	Known RBP	10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	B4GALT3	O60512	393 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	TOM1L1	O75674	476 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	FGF18	O76093	207 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	DDHD2	O94830	711 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	SLFN14	P0C7P3	912 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	MYB	P10242	640 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	DNAJB1	P25685	340 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	ALDH7A1	P49419	539 aa	Known RBP	10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	COASY	Q13057	564 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	CUL4B	Q13620	913 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	NOLC1	Q14978	699 aa	Known RBP eCLIP	10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	SKIV2L	Q15477	1246 aa	Known RBP	10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	PTPRO	Q16827	1216 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	ZNF720	Q7Z2F6	126 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	SPPL3	Q8TCT6	385 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	POF1B	Q8WVV4	589 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	RABGGTA	Q92696	567 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	P2RX5	Q93086	422 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	C7orf25	Q9BPX7	421 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	CCDC94	Q9BW85	323 aa	Predicted RBP	10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	FGFBP2	Q9BYJ0	223 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	CXCL16	Q9H2A7	254 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	MAGEF1	Q9HAY2	307 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	PTPRH	Q9HD43	1115 aa		10.76	□□□□□ -0.69
CALD1-223	ENST00000496024	TSHZ2	Q9NRE2	1034 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms