RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919		H3BQV1	296 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	ADCY5	O95622	1261 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	FAM86B2	P0C5J1	330 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	HOXD12	P35452	270 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	MNX1	P50219	401 aa	Predicted RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	CPT1A	P50416	773 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	PMS2	P54278	862 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	SP2	Q02086	613 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	POU5F1B	Q06416	359 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	ARHGAP1	Q07960	439 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	KCNA10	Q16322	511 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	LETM2	Q2VYF4	491 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	PRR16	Q569H4	304 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	EARS2	Q5JPH6	523 aa	Known RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	IFFO2	Q5TF58	517 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	FIP1L1	Q6UN15	594 aa	Known RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	PLA2G4D	Q86XP0	818 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	SENP6	Q9GZR1	1112 aa	Predicted RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	C11orf49	Q9H6J7	331 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	MLXIP	Q9HAP2	919 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	SLC39A2	Q9NP94	309 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	KCNH7	Q9NS40	1196 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	STK39	Q9UEW8	545 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	TBK1	Q9UHD2	729 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	TIMM22	Q9Y584	194 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	SPATA31C2	B4DYI2	1134 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	TDP2	O95551	362 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	ASGR1	P07306	291 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	MYL3	P08590	195 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	ICAM3	P32942	547 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	TSPAN7	P41732	249 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	ATN1	P54259	1190 aa	Predicted RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	TAF11	Q15544	211 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	CCDC14	Q49A88	953 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	PABPC1L	Q4VXU2	614 aa	Known RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	BRDT	Q58F21	947 aa	Predicted RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	CYFIP1	Q7L576	1253 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	PPFIBP1	Q86W92	1011 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	PCSK9	Q8NBP7	692 aa	Known RBP	12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	APPL2	Q8NEU8	664 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	CCDC110	Q8TBZ0	833 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	AFG1L	Q8WV93	481 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	CRYGN	Q8WXF5	182 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	SPATA33	Q96N06	139 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	GTF3C4	Q9UKN8	822 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919		Q9Y3F1	56 aa		12.5	□□□□□ -0.41
BRCA1-222	ENST00000493919	DDX39A	O00148	427 aa	Known RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	NOP56	O00567	594 aa	Known RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	ATP9A	O75110	1047 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CYP3A4	P08684	503 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	AR	P10275	920 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	BTF3	P20290	206 aa	Known RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CST5	P28325	142 aa	Predicted RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	SMTN	P53814	917 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CHMP4BP1	P59074	171 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CDK17	Q00537	523 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CAMK2B	Q13554	666 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CELF3	Q5SZQ8	465 aa	Known RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	C10orf76	Q5T2E6	689 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	NXN	Q6DKJ4	435 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	MCTP1	Q6DN14	999 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	KANK3	Q6NY19	840 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	FOXR1	Q6PIV2	292 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CXCL17	Q6UXB2	119 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	NEK8	Q86SG6	692 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	KLHDC9	Q8NEP7	349 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	ZNF75CP	Q92670	426 aa	Predicted RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	ASIC4	Q96FT7	647 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	CGREF1	Q99674	301 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	BCAS3	Q9H6U6	928 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	HESX1	Q9UBX0	185 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	IGLV3-22	A0A075B6J6	115 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919		A0A1W2PQ45	241 aa	Predicted RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919		A0A1W2PQY0	241 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	VPS37C	A5D8V6	355 aa	Predicted RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	TMEM247	A6NEH6	219 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	MOXD2P	A6NHM9	499 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919		A6NJR5	290 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	MMP3	P08254	477 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	ACLY	P53396	1101 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	TUBA3C	Q13748	450 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	LAMC2	Q13753	1193 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	HSDL1	Q3SXM5	330 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	IRGC	Q6NXR0	463 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	METTL7B	Q6UX53	244 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	LINC00469	Q8N7U9	141 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	SYT2	Q8N9I0	419 aa	Predicted RBP	12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	TNFRSF25	Q93038	417 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	TBC1D31	Q96DN5	1066 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	GLT1D1	Q96MS3	346 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	KCNF1	Q9H3M0	494 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	STARD7	Q9NQZ5	370 aa		12.49	□□□□□ -0.41
BRCA1-222	ENST00000493919	KIF28P	B7ZC32	967 aa		12.48	□□□□□ -0.41
BRCA1-222	ENST00000493919	MEIS1	O00470	390 aa		12.48	□□□□□ -0.41
BRCA1-222	ENST00000493919	EBAG9	O00559	213 aa		12.48	□□□□□ -0.41
BRCA1-222	ENST00000493919	FOXD2	O60548	495 aa	Predicted RBP	12.48	□□□□□ -0.41
BRCA1-222	ENST00000493919	CCNT1	O60563	726 aa	Known RBP	12.48	□□□□□ -0.41
BRCA1-222	ENST00000493919	LDHA	P00338	332 aa	Known RBP	12.48	□□□□□ -0.41
BRCA1-222	ENST00000493919	GNAT1	P11488	350 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms