RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 UBL4BQ8N7F7 174 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ADAM33Q9BZ11 813 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ASIC3Q9UHC3 531 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PAPPAQ13219 1627 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ADAMTSL3P82987 1691 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ECE2O60344 883 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 DCTN3O75935 186 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 CYP11B2P19099 503 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 TNFAIP3P21580 790 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 VPS41P49754 854 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 OCRLQ01968 901 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PPP1R21Q6ZMI0 780 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 RFX8Q6ZV50 586 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 MTDHQ86UE4 582 aaKnown RBP12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ZC3H3Q8IXZ2 948 aaKnown RBP12.51□□□□□ -0.41
HDAC4-210ENST00000493582 KBTBD2Q8IY47 623 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 C7orf43Q8WVR3 580 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 HAS1Q92839 578 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ZSWIM1Q9BR11 485 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 TIPINQ9BVW5 301 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PCDHA12Q9UN75 941 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 SUGT1Q9Y2Z0 365 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ZNF804BA4D1E1 1349 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 CACNA1SQ13698 1873 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 TOM1O60784 492 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 LMNAP02545 664 aaKnown RBP12.5□□□□□ -0.41
HDAC4-210ENST00000493582 COMTP21964 271 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 KCNA1Q09470 495 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 ARHGAP44Q17R89 818 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 ARSHQ5FYA8 562 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 SEL1L2Q5TEA6 688 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 PIGBQ92521 554 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 DNAJC12Q9UKB3 198 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 GRID1Q9ULK0 1009 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 KAT6BQ8WYB5 2073 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 FAM47DPA6NHR8 397 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 ECEL1O95672 775 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 SPATA31D3P0C874 917 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 NEK3P51956 506 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 TMED2Q15363 201 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 KNOP1Q1ED39 458 aaKnown RBP12.5□□□□□ -0.41
HDAC4-210ENST00000493582 PABPC1LQ4VXU2 614 aaKnown RBP12.5□□□□□ -0.41
HDAC4-210ENST00000493582 SPATA31D4Q6ZUB0 917 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 C9orf72Q96LT7 481 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 DHX36Q9H2U1 1008 aaKnown RBP12.5□□□□□ -0.41
HDAC4-210ENST00000493582 UBN1Q9NPG3 1134 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 GALNT8Q9NY28 637 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 ZFP69BQ9UJL9 534 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 MROH7Q68CQ1 1323 aa12.5□□□□□ -0.41
HDAC4-210ENST00000493582 ANKRD62A6NC57 917 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 TRAFD1O14545 582 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ASMTLO95671 621 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 DLATP10515 647 aaKnown RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 HSPA6P17066 643 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 KRT17Q04695 432 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SLC34A1Q06495 639 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 MYBPC3Q14896 1274 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SBK1Q52WX2 424 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 TNS2Q63HR2 1409 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 NCAPG2Q86XI2 1143 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ZNF34Q8IZ26 560 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ZNF444Q8N0Y2 327 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 WDR60Q8WVS4 1066 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ARAP2Q8WZ64 1704 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 BTBD6Q96KE9 485 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 FAM84BQ96KN1 310 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 DNAJC18Q9H819 358 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ZWILCHQ9H900 591 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 DNAAF2Q9NVR5 837 aaKnown RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ZSCAN9O15535 394 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 LRRN2O75325 713 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 NKX1-1Q15270 411 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 CLUL1Q15846 466 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 CAVIN4Q5BKX8 364 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 PPP4R3CPQ6ZMV5 832 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SLC13A5Q86YT5 568 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 CCDC125Q86Z20 511 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SH3TC2Q8TF17 1288 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 C10orf82Q8WW14 230 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SPZ1Q9BXG8 430 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 NINJ2Q9NZG7 142 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 WASF2Q9Y6W5 498 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 C1orf167Q5SNV9 1468 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ATP8B3O60423 1300 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 CDH16O75309 829 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 KLRK1P26718 216 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 PSMC4P43686 418 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 ITGA8P53708 1063 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 UBE4AQ14139 1066 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SIX1Q15475 284 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 UBE2SQ16763 222 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 PLEKHG4Q58EX7 1191 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 C12orf60Q5U649 245 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 AZIN2Q96A70 460 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 DTNBP1Q96EV8 351 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 SLC4A9Q96Q91 983 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 NPHS2Q9NP85 383 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 KRT82Q9NSB4 513 aa12.49□□□□□ -0.41
HDAC4-210ENST00000493582 DDX25Q9UHL0 483 aaKnown RBP12.49□□□□□ -0.41
HDAC4-210ENST00000493582 DCTN4Q9UJW0 460 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms