RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TNFRSF1AP19438 455 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 ACRV1P26436 265 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 CASRP41180 1078 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 MAN2A2P49641 1150 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 GZMKP49863 264 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 ZXDAP98168 799 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 APBA1Q02410 837 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 DUSP8Q13202 625 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 TRIM25Q14258 630 aaKnown RBP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 UBE3CQ15386 1083 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 MUM1L1Q5H9M0 696 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 ZNF772Q68DY9 489 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 MAMDC4Q6UXC1 1216 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 SPRED1Q7Z699 444 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 NECAB2Q7Z6G3 386 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 FAM83AQ86UY5 434 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 DDX42Q86XP3 938 aaKnown RBP eCLIP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 ELOA2Q8IYF1 753 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 PIK3C3Q8NEB9 887 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 PPP1R14CQ8TAE6 165 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 COG1Q8WTW3 980 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 ST8SIA2Q92186 375 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 IL17RAQ96F46 866 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 WWC2-AS2Q96NR7 200 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 PLEKHG4BQ96PX9 1271 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 CPPED1Q9BRF8 314 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 ADI1Q9BV57 179 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 GPR87Q9BY21 358 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 PUS7LQ9H0K6 701 aaKnown RBP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 VPS11Q9H270 941 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 IFT122Q9HBG6 1241 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 PARPBPQ9NWS1 579 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 CLCA2Q9UQC9 943 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 MRFAP1Q9Y605 127 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 WDR97A6NE52 1622 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 NUP160Q12769 1436 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 RAPGEF6Q8TEU7 1601 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 A0A1W2PR48 441 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 PRR5-ARHGAP8B1AHC4 643 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ALG1L2C9J202 215 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 RECQL4O94761 1208 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 GASTP01350 101 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 AMHP03971 560 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ECHS1P30084 290 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 PTPN7P35236 360 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 GDF5P43026 501 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 GUCY2FP51841 1108 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 SRSF2Q01130 221 aaKnown RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ITKQ08881 620 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 KLF1Q13351 362 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ACAP2Q15057 778 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 C19orf54Q5BKX5 351 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 PGM2L1Q6PCE3 622 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 BTNL9Q6UXG8 535 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 RNF207Q6ZRF8 634 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 Q6ZSN1 163 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 APBB1IPQ7Z5R6 666 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 CNTD1Q8N815 330 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ABCF1Q8NE71 845 aaKnown RBP eCLIP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ZNF480Q8WV37 535 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 SNX33Q8WV41 574 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 LMBR1Q8WVP7 490 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 EXTL1Q92935 676 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 PGBD4Q96DM1 585 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 FDXACB1Q9BRP7 624 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 KRTAP3-1Q9BYR8 98 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 GREM2Q9H772 168 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 MKS1Q9NXB0 559 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 HECAQ9UBI9 543 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 SAP30BPQ9UHR5 308 aaKnown RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 TMPRSS11EQ9UL52 423 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 DNM3Q9UQ16 869 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 REXO2Q9Y3B8 237 aaKnown RBP2.91□□□□□ -1.94
HMGB1-208ENST00000490788 CD109Q6YHK3 1445 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 PBRM1Q86U86 1689 aa2.91□□□□□ -1.94
HMGB1-208ENST00000490788 ABCC2Q92887 1545 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 ANKRD62A6NC57 917 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MATN3O15232 486 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 HOXA3O43365 443 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 EIF5BO60841 1220 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 ITGA10O75578 1167 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 OSMP13725 252 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 HK1P19367 917 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 CDK11BP21127 795 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 CCND1P24385 295 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 CTSSP25774 331 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 ADSLP30566 484 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 CRHR1P34998 444 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 ADAM8P78325 824 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 PTH1RQ03431 593 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 FAM50AQ14320 339 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 RRP1BQ14684 758 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 R3HDM1Q15032 1099 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 NOMO1Q15155 1222 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MUM1Q2TAK8 710 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 ANO4Q32M45 955 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 FAM214AQ32MH5 1076 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MBNL2Q5VZF2 373 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 LHFPL2Q6ZUX7 228 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 LYSMD2Q8IV50 215 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms