RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 RABGGTAQ92696 567 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 HERC2P3Q9BVR0 1158 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 APOL6Q9BWW8 343 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 NXF3Q9H4D5 531 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 WDR6Q9NNW5 1121 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 TRIP11Q15643 1979 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 FANCMQ8IYD8 2048 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 VWA8A3KMH1 1905 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 ARL5CA6NH57 179 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 TBX3O15119 743 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 TEX28O15482 410 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 EPB41L2O43491 1005 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 RFPL2O75678 378 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 SPATA31D3P0C874 917 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 SRFP11831 508 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 ITGA4P13612 1032 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 OR1G1P47890 313 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 PTENP60484 403 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 MBTD1Q05BQ5 628 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 DSC1Q08554 894 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 CAPSQ13938 189 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 SPATA31D4Q6ZUB0 917 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 DGLUCYQ7Z3D6 616 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 RNF168Q8IYW5 571 aaPredicted RBP15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 SMG7Q92540 1137 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 NXPE3Q969Y0 559 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 RMDN1Q96DB5 314 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 RPS6KC1Q96S38 1066 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 MTRQ99707 1265 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 EIF2AK1Q9BQI3 630 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 ZSWIM4Q9H7M6 989 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 PIDD1Q9HB75 910 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 EPS15L1Q9UBC2 864 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 ORC3Q9UBD5 711 aaPredicted RBP15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 COL4A3Q01955 1670 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 MIA3Q5JRA6 1907 aa15.41■□□□□ 0.06
SQSTM1-208ENST00000485412 INO80B-WBP1J3KQ70 363 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 ERLIN2O94905 339 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 ARF4P18085 180 aaPredicted RBP15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 GLUD2P49448 558 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 KIAA0319Q5VV43 1072 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 POTEGQ6S5H5 508 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 SLC44A3Q8N4M1 653 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 GSTCDQ8NEC7 633 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 ST13P5Q8NFI4 369 aaPredicted RBP15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 TCP11Q8WWU5 503 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 MYADMQ96S97 322 aa15.4■□□□□ 0.06
SQSTM1-208ENST00000485412 MYH15Q9Y2K3 1946 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 MED19A0JLT2 244 aaPredicted RBP15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 TTLL13PA6NNM8 815 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 MARCH6O60337 910 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 JAK2O60674 1132 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 DKC1O60832 514 aaKnown RBP eCLIP15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 CDKL5O76039 1030 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 DCNP07585 359 aaKnown RBP15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 GLRA2P23416 452 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 AKAP5P24588 427 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 ARL2P36404 184 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 ME3Q16798 604 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 GET4Q7L5D6 327 aaPredicted RBP15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 OTUD6AQ7L8S5 288 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 GPR152Q8TDT2 470 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 PIGOQ8TEQ8 1089 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 HSD17B14Q9BPX1 270 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 PAAF1Q9BRP4 392 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 RHOBTB2Q9BYZ6 727 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 GPR62Q9BZJ7 368 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 CSRNP2Q9H175 543 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 CXCL16Q9H2A7 254 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 UBN1Q9NPG3 1134 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 GPRC5CQ9NQ84 441 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 ARHGEF3Q9NR81 526 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 KLK14Q9P0G3 267 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 SIT1Q9Y3P8 196 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 PPME1Q9Y570 386 aa15.39■□□□□ 0.05
SQSTM1-208ENST00000485412 DMXL1Q9Y485 3027 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 POTEMA6NI47 508 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 GAS2O43903 313 aaKnown RBP15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 NR1I2O75469 434 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 RPL17P18621 184 aaKnown RBP15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 KRT2P35908 639 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 ST3GAL1Q11201 340 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 PHLDB3Q6NSJ2 640 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 NOTUMQ6P988 496 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 IFNLR1Q8IU57 520 aaPredicted RBP15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 GLYCTKQ8IVS8 523 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 CNNM3Q8NE01 707 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 ZNF707Q96C28 371 aaPredicted RBP15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 USP20Q9Y2K6 914 aa15.38■□□□□ 0.05
SQSTM1-208ENST00000485412 BTBD18B2RXH4 712 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 ASAP2O43150 1006 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 NPTXRO95502 500 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 SP9P0CG40 484 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 RARRES1P49788 294 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 PUM1Q14671 1186 aaKnown RBP eCLIP15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 CALCRLQ16602 461 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 DCLRE1AQ6PJP8 1040 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 MAEAQ7L5Y9 396 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 PALB2Q86YC2 1186 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 C1orf210Q8IVY1 113 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms