RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 MPZL3Q6UWV2 235 aa9□□□□□ -0.97
USP4-210ENST00000483212 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9□□□□□ -0.97
USP4-210ENST00000483212 FAM228AQ86W67 206 aa9□□□□□ -0.97
USP4-210ENST00000483212 CBWD2Q8IUF1 395 aa9□□□□□ -0.97
USP4-210ENST00000483212 GPD1LQ8N335 351 aa9□□□□□ -0.97
USP4-210ENST00000483212 ANKLE1Q8NAG6 615 aa9□□□□□ -0.97
USP4-210ENST00000483212 DIS3LQ8TF46 1054 aaKnown RBP9□□□□□ -0.97
USP4-210ENST00000483212 POMGNT1Q8WZA1 660 aa9□□□□□ -0.97
USP4-210ENST00000483212 SLC35C1Q96A29 364 aa9□□□□□ -0.97
USP4-210ENST00000483212 SAAL1Q96ER3 474 aa9□□□□□ -0.97
USP4-210ENST00000483212 BICD1Q96G01 975 aa9□□□□□ -0.97
USP4-210ENST00000483212 MFSD14AQ96MC6 490 aa9□□□□□ -0.97
USP4-210ENST00000483212 OSBPL7Q9BZF2 842 aa9□□□□□ -0.97
USP4-210ENST00000483212 CDT1Q9H211 546 aa9□□□□□ -0.97
USP4-210ENST00000483212 VPS16Q9H269 839 aa9□□□□□ -0.97
USP4-210ENST00000483212 METTL14Q9HCE5 456 aaKnown RBP9□□□□□ -0.97
USP4-210ENST00000483212 ARMCX3Q9UH62 379 aaPredicted RBP9□□□□□ -0.97
USP4-210ENST00000483212 NOC2LQ9Y3T9 749 aaKnown RBP9□□□□□ -0.97
USP4-210ENST00000483212 MEFVO15553 781 aaPredicted RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 CBFA2T2O43439 604 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 TFRCP02786 760 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 EPB41P11171 864 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 MTIF2P46199 727 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 DLG4P78352 724 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 ENPEPQ07075 957 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 CCDC173Q0VFZ6 552 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 BFSP1Q12934 665 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 MBTPS1Q14703 1052 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 SNRNP35Q16560 246 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 PTPN21Q16825 1174 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 VWA3BQ502W6 1294 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 UBXN11Q5T124 520 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 DPY19L2P1Q6NXN4 242 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 ANKRD33Q7Z3H0 272 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 RSPH3Q86UC2 560 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 CDR2LQ86X02 465 aaPredicted RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 VSTM4Q8IW00 320 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 ANKRD20A12PQ8NF67 263 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 VTI1AQ96AJ9 217 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 CPB2Q96IY4 423 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 SCLT1Q96NL6 688 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 FAM213AQ9BRX8 229 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 NOC4LQ9BVI4 516 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 MCOLN1Q9GZU1 580 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 NDST4Q9H3R1 872 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 KIAA1586Q9HCI6 787 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 AGPAT5Q9NUQ2 364 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 ANKFY1Q9P2R3 1169 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 CPSF3Q9UKF6 684 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 AGO2Q9UKV8 859 aaKnown RBP8.99□□□□□ -0.97
USP4-210ENST00000483212 FRMD4BQ9Y2L6 1034 aa8.99□□□□□ -0.97
USP4-210ENST00000483212 A0A1W2PQC6 194 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 N4BP3O15049 544 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 OGTO15294 1046 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CLDN3O15551 220 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CTSHP09668 335 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 TRIM49P0CI25 452 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 TRIM49CP0CI26 452 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 MCF2P10911 925 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CKBP12277 381 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 PRKCSHP14314 528 aaPredicted RBP8.98□□□□□ -0.97
USP4-210ENST00000483212 CAPN2P17655 700 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 SFPQP23246 707 aaKnown RBP eCLIP8.98□□□□□ -0.97
USP4-210ENST00000483212 AXLP30530 894 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 DEKP35659 375 aaKnown RBP8.98□□□□□ -0.97
USP4-210ENST00000483212 THPOP40225 353 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 TNFSF9P41273 254 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 ACOT2P49753 483 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 VAMP7P51809 220 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CLDN10P78369 228 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 PPP2R3AQ06190 1150 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CYP24A1Q07973 514 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 PPP3CAQ08209 521 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 TBX2Q13207 712 aaPredicted RBP8.98□□□□□ -0.97
USP4-210ENST00000483212 LPIN1Q14693 890 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 GPNMBQ14956 572 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 NOLC1Q14978 699 aaKnown RBP eCLIP8.98□□□□□ -0.97
USP4-210ENST00000483212 PSMD6Q15008 389 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 ZNF568Q3ZCX4 644 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 SEZ6Q53EL9 994 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 FBXO47Q5MNV8 452 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 ZNF618Q5T7W0 954 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 SLC39A5Q6ZMH5 540 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 INTS8Q75QN2 995 aaKnown RBP8.98□□□□□ -0.97
USP4-210ENST00000483212 CATSPER4Q7RTX7 472 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 UBE2Q1Q7Z7E8 422 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 ZBTB33Q86T24 672 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 BRSK2Q8IWQ3 736 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CCDC155Q8N6L0 562 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 CEP120Q8N960 986 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 RDH13Q8NBN7 331 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 TMC2Q8TDI7 906 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 PARD3BQ8TEW8 1205 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 ERGIC2Q96RQ1 377 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 MSTO1Q9BUK6 570 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 AGO3Q9H9G7 860 aaKnown RBP8.98□□□□□ -0.97
USP4-210ENST00000483212 ERVK-5Q9HDB9 667 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 GINS2Q9Y248 185 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 SIK3Q9Y2K2 1263 aa8.98□□□□□ -0.97
USP4-210ENST00000483212 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms