RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CYTH3O43739 400 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 DHX16O60231 1041 aaKnown RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 AKAP3O75969 853 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 ATG7O95352 703 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 CCNE2O96020 404 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 C8AP07357 584 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 CCDC192P0DO97 292 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 DARSP14868 501 aaKnown RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 ZSCAN20P17040 1043 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 EIF4BP23588 611 aaKnown RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 CCR2P41597 374 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 STAT5BP51692 787 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 ACTR2P61160 394 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 HAND2P61296 217 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 KCNC4Q03721 635 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 RNASELQ05823 741 aaKnown RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 ITGB3BPQ13352 177 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 ASPRV1Q53RT3 343 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 FAM78AQ5JUQ0 283 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 COLEC12Q5KU26 742 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 USP17L6PQ6QN14 398 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 PRSS55Q6UWB4 352 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 GLB1LQ6UWU2 654 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 CCDC60Q8IWA6 550 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 LRRC71Q8N4P6 559 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 SAMD3Q8N6K7 520 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 GIMAP8Q8ND71 665 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 PIP4K2CQ8TBX8 421 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 RSPRY1Q96DX4 576 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 TCEAL4Q96EI5 215 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 ZSWIM3Q96MP5 696 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 CAMK1GQ96NX5 476 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 PIGSQ96S52 555 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 CLSTN3Q9BQT9 956 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 TRAIPQ9BWF2 469 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 BRD9Q9H8M2 597 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 JPH1Q9HDC5 661 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 TRPV5Q9NQA5 729 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 FSCN3Q9NQT6 498 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 FAN1Q9Y2M0 1017 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 UBIAD1Q9Y5Z9 338 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 BSNQ9UPA5 3926 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 PCDH15Q96QU1 1955 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 PTPRDP23468 1912 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 CABIN1Q9Y6J0 2220 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 BOD1L1Q8NFC6 3051 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 COL1A2P08123 1366 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 ZMYM2Q9UBW7 1377 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 SLC38A8A6NNN8 435 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 UPK3BL1B0FP48 263 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 UPK3BL2E5RIL1 263 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 H0Y626 953 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 KHNYNO15037 678 aaKnown RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 IPO8O15397 1037 aaKnown RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 ZNF862O60290 1169 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 HBP1O60381 514 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 TRIM16O95361 564 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 WISP1O95388 367 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 C1RP00736 705 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 POMCP01189 267 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 FGAP02671 866 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 ZFYP08048 801 aaPredicted RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 RHOP08100 348 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 HNRNPA1P09651 372 aaKnown RBP eCLIP5.48□□□□□ -1.53
USP4-209ENST00000475873 KRT10P13645 584 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 GDI1P31150 447 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 HOXA9P31269 272 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 VIPR2P41587 438 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 MAPK8P45983 427 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 GPC3P51654 580 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 CFHR1Q03591 330 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 CYP4F3Q08477 520 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 DSC1Q08554 894 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 DRP2Q13474 957 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 PABPC1LQ4VXU2 614 aaKnown RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 HSP90AB4PQ58FF6 505 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 RTP2Q5QGT7 225 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 PMS2CLQ68D20 193 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 HOMER1Q86YM7 354 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 ITPRIPQ8IWB1 547 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 PLEKHM2Q8IWE5 1019 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 COLGALT2Q8IYK4 626 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 ENAHQ8N8S7 591 aaPredicted RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 FAM181AQ8N9Y4 354 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 OR2I1PQ8NGU4 316 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 ADAMTS14Q8WXS8 1223 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 CHFRQ96EP1 664 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 ASB16Q96NS5 453 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 HHIPQ96QV1 700 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 TMEM175Q9BSA9 504 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 TRMT61BQ9BVS5 477 aaKnown RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 FAM105AQ9NUU6 356 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 FNIP2Q9P278 1114 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 CACNG4Q9UBN1 327 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 SLC9A2Q9UBY0 812 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 DPP7Q9UHL4 492 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 MAD2L2Q9UI95 211 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 MBD1Q9UIS9 605 aaPredicted RBP5.48□□□□□ -1.53
USP4-209ENST00000475873 DNMT3LQ9UJW3 386 aa5.48□□□□□ -1.53
USP4-209ENST00000475873 KCNH3Q9ULD8 1083 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms