RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 HOXC8P31273 242 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 CYLC1P35663 651 aaPredicted RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 VEGFBP49765 207 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 GPC3P51654 580 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 JAM2P57087 298 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 NLRP11P59045 1033 aaKnown RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 ADAM17P78536 824 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 CDC42EP1Q00587 391 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 CAP1Q01518 475 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 APBA1Q02410 837 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 MCL1Q07820 350 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 PRPF4BQ13523 1007 aaKnown RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 ATF7IP2Q5U623 682 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 SFMBT2Q5VUG0 894 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 KRT39Q6A163 491 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 NFRKBQ6P4R8 1299 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 MPZL3Q6UWV2 235 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 DNAJC5GQ8N7S2 189 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 LMO3Q8TAP4 145 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 C16orf45Q96MC5 204 aaPredicted RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 CHP1Q99653 195 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 DESI2Q9BSY9 194 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 INO80BQ9C086 356 aaPredicted RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 HAPLN2Q9GZV7 340 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 TMEM117Q9H0C3 514 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 TMEM8AQ9HCN3 771 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 PTPRHQ9HD43 1115 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 NLRC4Q9NPP4 1024 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 SETD4Q9NVD3 440 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 TRMT1Q9NXH9 659 aaKnown RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 SAGE1Q9NXZ1 904 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 RBAKQ9NYW8 714 aaPredicted RBP10.19□□□□□ -0.78
VPS52-216ENST00000471309 AIPL1Q9NZN9 384 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 APEX2Q9UBZ4 518 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 SRRDQ9UH36 339 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 TNFSF13BQ9Y275 285 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 USP20Q9Y2K6 914 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 COQ4Q9Y3A0 265 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 FHOD1Q9Y613 1164 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 ADGRG1Q9Y653 693 aa10.19□□□□□ -0.78
VPS52-216ENST00000471309 A0A087WZ62 844 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 SSU72P8A0A1W2PR75 194 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 MYADML2A6NDP7 307 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 TTLL13PA6NNM8 815 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 EIF3CLB5ME19 914 aaKnown RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 ADAMTS4O75173 837 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 VTNP04004 478 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 HMGCRP04035 888 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 TUBB4AP04350 444 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 SERPING1P05155 500 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 C6orf222P0C671 652 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 GCLMP48507 274 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 IRX5P78411 483 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 BEX3Q00994 111 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 CACNB2Q08289 660 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 RAPGEF1Q13905 1077 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 PTPN14Q15678 1187 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 AMHR2Q16671 573 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 ZNF568Q3ZCX4 644 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 SLC9C1Q4G0N8 1177 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 COL13A1Q5TAT6 717 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 HGSNATQ68CP4 663 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 IQCEQ6IPM2 695 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 CRELD2Q6UXH1 353 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 C15orf39Q6ZRI6 1047 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 SRGAP1Q7Z6B7 1085 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 FMNL3Q8IVF7 1028 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 BRSK2Q8IWQ3 736 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 REXO1L1PQ8IX06 675 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 KIAA0319LQ8IZA0 1049 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 EHBP1Q8NDI1 1231 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 CD99L2Q8TCZ2 262 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 PXYLP1Q8TE99 480 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 NLRP7Q8WX94 980 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 VTI1AQ96AJ9 217 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 CCDC127Q96BQ5 260 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 ZBTB45Q96K62 511 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 SPAG5Q96R06 1193 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 EIF3CQ99613 913 aaKnown RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 FDXACB1Q9BRP7 624 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 MTG1Q9BT17 334 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 MINDY3Q9H8M7 445 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 NHEJ1Q9H9Q4 299 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 SPC25Q9HBM1 224 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 ARHGAP20Q9P2F6 1191 aa10.18□□□□□ -0.78
VPS52-216ENST00000471309 EPN1Q9Y6I3 576 aaPredicted RBP10.18□□□□□ -0.78
VPS52-216ENST00000471309 FRMPD3Q5JV73 1810 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 F8VZ95 297 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 GPR25O00155 361 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 OGTO15294 1046 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 B4GALT5O43286 388 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 IPO7O95373 1038 aaKnown RBP10.17□□□□□ -0.78
VPS52-216ENST00000471309 LCA5LO95447 670 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 GNAT1P11488 350 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 CYP2C9P11712 490 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 PRKAR2AP13861 404 aaKnown RBP10.17□□□□□ -0.78
VPS52-216ENST00000471309 ANXA13P27216 316 aa10.17□□□□□ -0.78
VPS52-216ENST00000471309 CST5P28325 142 aaPredicted RBP10.17□□□□□ -0.78
VPS52-216ENST00000471309 MATR3P43243 847 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS52-216ENST00000471309 ACOT2P49753 483 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms