RNA–Protein interactions for RNA: ENST00000470083.5

LSM2-209, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM2, Length 641 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-209	ENST00000470083	RPL17	P18621	184 aa	Known RBP	13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	NCL	P19338	710 aa	Known RBP	13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	PRR16	Q569H4	304 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	UBXN11	Q5T124	520 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	LIN9	Q5TKA1	542 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	FUT10	Q6P4F1	479 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	NPAS3	Q8IXF0	933 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	SMC5	Q8IY18	1101 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	DNASE1L2	Q92874	299 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	NLRP4	Q96MN2	994 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	COLEC11	Q9BWP8	271 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	NIFK	Q9BYG3	293 aa	Known RBP	13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	GPR62	Q9BZJ7	368 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	IFT122	Q9HBG6	1241 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	BARHL2	Q9NY43	387 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	KCNH3	Q9ULD8	1083 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	MYH15	Q9Y2K3	1946 aa		13.47	□□□□□ -0.25
LSM2-209	ENST00000470083	ARL5C	A6NH57	179 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	MAN2B1	O00754	1011 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	HR	O43593	1189 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	XYLB	O75191	536 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	POU2F2	P09086	479 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	HOXA11	P31270	313 aa	Predicted RBP	13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	MCM5	P33992	734 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	CNR2	P34972	360 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	MTERF2	Q49AM1	385 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	PPM1L	Q5SGD2	360 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	JAKMIP3	Q5VZ66	844 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	UNQ6494/PRO21346	Q6UXR6	183 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	MICU3	Q86XE3	530 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	KSR1	Q8IVT5	923 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	KDF1	Q8NAX2	398 aa	Predicted RBP	13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	CNNM3	Q8NE01	707 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	MAP4K1	Q92918	833 aa		13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	NDRG2	Q9UN36	371 aa	Known RBP	13.46	□□□□□ -0.25
LSM2-209	ENST00000470083	SOBP	A7XYQ1	873 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	C1QTNF9B	B2RNN3	333 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	CCL16	O15467	120 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	C8A	P07357	584 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	C1QTNF9	P0C862	333 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	ITGA4	P13612	1032 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	SFN	P31947	248 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	JAK3	P52333	1124 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	AASDH	Q4L235	1098 aa	Predicted RBP	13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	XKR3	Q5GH77	459 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	B4GALNT3	Q6L9W6	998 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	SMG8	Q8ND04	991 aa	Known RBP	13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	RUFY2	Q8WXA3	655 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	LENG9	Q96B70	501 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	GAD1	Q99259	594 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	ADAM28	Q9UKQ2	775 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	POLI	Q9UNA4	740 aa		13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	MYH9	P35579	1960 aa	Known RBP	13.45	□□□□□ -0.26
LSM2-209	ENST00000470083	TMEM150B	A6NC51	233 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	MAF	O75444	373 aa	Predicted RBP	13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	STBD1	O95210	358 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	CIITA	P33076	1130 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	MLH1	P40692	756 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	CXCL12	P48061	93 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	SCNN1G	P51170	649 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	SATB1	Q01826	763 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	NUCB1	Q02818	461 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	FUT2	Q10981	343 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	PABPC1L	Q4VXU2	614 aa	Known RBP	13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	RIT2	Q99578	217 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	JPH2	Q9BR39	696 aa	Predicted RBP	13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	PLA2G2F	Q9BZM2	168 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	GDE1	Q9NZC3	331 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	IPP	Q9Y573	584 aa		13.44	□□□□□ -0.26
LSM2-209	ENST00000470083		V9GY48	417 aa	Predicted RBP	13.44	□□□□□ -0.26
LSM2-209	ENST00000470083	CHURC1-FNTB	B4DL54	471 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	CHMP2A	O43633	222 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	GAS7	O60861	476 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	FNTB	P49356	437 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	SRSF5	Q13243	272 aa	Known RBP	13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	RTP2	Q5QGT7	225 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	SRGAP1	Q7Z6B7	1085 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	SGMS1	Q86VZ5	419 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	FAM160A2	Q8N612	972 aa	Predicted RBP	13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	C12orf50	Q8NA57	414 aa	Predicted RBP	13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	RDM1	Q8NG50	284 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	ELSPBP1	Q96BH3	223 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	ZFP42	Q96MM3	310 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	CLSTN3	Q9BQT9	956 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	SH2D3A	Q9BRG2	576 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	MINDY3	Q9H8M7	445 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	LMAN1L	Q9HAT1	526 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	RBM28	Q9NW13	759 aa	Known RBP	13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	MIOS	Q9NXC5	875 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	COL4A3BP	Q9Y5P4	624 aa		13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	SETX	Q7Z333	2677 aa	Known RBP	13.43	□□□□□ -0.26
LSM2-209	ENST00000470083	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
LSM2-209	ENST00000470083	WDFY3	Q8IZQ1	3526 aa		13.42	□□□□□ -0.26
LSM2-209	ENST00000470083	TMEM8B	A6NDV4	472 aa		13.42	□□□□□ -0.26
LSM2-209	ENST00000470083	MSH4	O15457	936 aa		13.42	□□□□□ -0.26
LSM2-209	ENST00000470083	KCNK5	O95279	499 aa		13.42	□□□□□ -0.26
LSM2-209	ENST00000470083	PAPSS2	O95340	614 aa	Predicted RBP	13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms