RNA–Protein interactions for RNA: ENST00000467272.6

UBR4-211, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-211	ENST00000467272	B3GALT6	Q96L58	329 aa		13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	FAM20A	Q96MK3	541 aa		13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	JAKMIP1	Q96N16	626 aa	Known RBP	13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	FAM193B	Q96PV7	902 aa	Predicted RBP	13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	NFKBIZ	Q9BYH8	718 aa		13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	HES2	Q9Y543	173 aa		13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	NUMBL	Q9Y6R0	609 aa		13.62	□□□□□ -0.23
UBR4-211	ENST00000467272	USP24	Q9UPU5	2620 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	SHISA7	A6NL88	538 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	ZBTB39	O15060	712 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	POU2F2	P09086	479 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	ITGA4	P13612	1032 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	MLH1	P40692	756 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	OR1G1	P47890	313 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	SCNN1G	P51170	649 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	NLRP5	P59047	1200 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	AKAP17A	Q02040	695 aa	Known RBP	13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	MBTD1	Q05BQ5	628 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	TOB2	Q14106	344 aa	Predicted RBP	13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	EMC2	Q15006	297 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	GALNT17	Q6IS24	598 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	DCLRE1A	Q6PJP8	1040 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	RNF149	Q8NC42	400 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	FGF14	Q92915	247 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	BORCS6	Q96GS4	357 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	CEP170P1	Q96L14	293 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	FOXQ1	Q9C009	403 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	CSRNP2	Q9H175	543 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	DDX25	Q9UHL0	483 aa	Known RBP	13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	FBXW11	Q9UKB1	542 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	GIT1	Q9Y2X7	761 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	CFAP47	Q6ZTR5	3102 aa		13.61	□□□□□ -0.23
UBR4-211	ENST00000467272	COL4A3	Q01955	1670 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	TBX3	O15119	743 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	LRRN2	O75325	713 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	CDC45	O75419	566 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	YWHAB	P31946	246 aa	Known RBP	13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	GPC5	P78333	572 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	EPHA7	Q15375	998 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	USP41	Q3LFD5	358 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	RTP2	Q5QGT7	225 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	FUT10	Q6P4F1	479 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	NOTUM	Q6P988	496 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	ELMSAN1	Q6PJG2	1045 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	ZC3H14	Q6PJT7	736 aa	Known RBP	13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	BLOC1S2	Q6QNY1	142 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	PARM1	Q6UWI2	310 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	PALB2	Q86YC2	1186 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	DCLK2	Q8N568	766 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	AIFM3	Q96NN9	605 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	CLSTN3	Q9BQT9	956 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	OSBPL6	Q9BZF3	934 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	ADAM28	Q9UKQ2	775 aa		13.6	□□□□□ -0.23
UBR4-211	ENST00000467272	CEP295	Q9C0D2	2601 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272		A0A1B0GUA9	196 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	SPDYE4	A6NLX3	237 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	DKC1	O60832	514 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	LILRB5	O75023	590 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	LYPLA2	O95372	231 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	DEXI	O95424	95 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	MYB	P10242	640 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	ARF4	P18085	180 aa	Predicted RBP	13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	TGM1	P22735	817 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	ARL2	P36404	184 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	CCT2	P78371	535 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	IRX6	P78412	446 aa	Predicted RBP	13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	FGD1	P98174	961 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	FZD5	Q13467	585 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	NAB2	Q15742	525 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	INF2	Q27J81	1249 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	SPECC1	Q5M775	1068 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	ZNF687	Q8N1G0	1237 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	ZBTB44	Q8NCP5	570 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	KCNG4	Q8TDN1	519 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	TCP11	Q8WWU5	503 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	HSD17B14	Q9BPX1	270 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	LXN	Q9BS40	222 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	COLEC11	Q9BWP8	271 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	NXF3	Q9H4D5	531 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	RGL1	Q9NZL6	768 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	FBXO4	Q9UKT5	387 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	CDH7	Q9ULB5	785 aa		13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	MTF2	Q9Y483	593 aa	Predicted RBP	13.59	□□□□□ -0.23
UBR4-211	ENST00000467272	KANSL1L	A0AUZ9	987 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	SLITRK3	O94933	977 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	HNRNPA1	P09651	372 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	RPL17	P18621	184 aa	Known RBP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	HOXA9	P31269	272 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	CREM	Q03060	361 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	CAPS	Q13938	189 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	MXD4	Q14582	209 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	POTEH	Q6S545	545 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	GET4	Q7L5D6	327 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	KRT25	Q7Z3Z0	450 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	LNX1	Q8TBB1	728 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	ASAP3	Q8TDY4	903 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	PIK3R5	Q8WYR1	880 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	CLDN23	Q96B33	292 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms