RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 ZSCAN23Q3MJ62 389 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 EEF1DP3Q658K8 133 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ISM2Q6H9L7 571 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ZNF365Q70YC5 407 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 RSPH1Q8WYR4 309 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 FUCA2Q9BTY2 467 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 CDT1Q9H211 546 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 MTIF3Q9H2K0 278 aaKnown RBP16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ANO10Q9NW15 660 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 MAPK8IP1Q9UQF2 711 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 COL4A6Q14031 1691 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 BICDL2A1A5D9 508 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 CALUO43852 315 aaPredicted RBP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 FAM189A1O60320 539 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 EOMESO95936 686 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 CCNE1P24864 410 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 ERCC5P28715 1186 aaPredicted RBP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 BMP8BP34820 402 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 RASIP1Q5U651 963 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 ARMCX5Q6P1M9 558 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 MRPL10Q7Z7H8 261 aaKnown RBP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 ZNF598Q86UK7 904 aaKnown RBP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 HACE1Q8IYU2 909 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 CRIPAKQ8N1N5 446 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 POMGNT1Q8WZA1 660 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 P2RX5Q93086 422 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 EIF2AQ9BY44 585 aaKnown RBP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 TRIM6Q9C030 488 aaPredicted RBP16.6■□□□□ 0.25
NPHP4-205ENST00000466897 SEMA6BQ9H3T3 888 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 ANKFY1Q9P2R3 1169 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 USP20Q9Y2K6 914 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 PCDHB2Q9Y5E7 798 aa16.6■□□□□ 0.25
NPHP4-205ENST00000466897 OGTO15294 1046 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 NPTXRO95502 500 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 LDHAP00338 332 aaKnown RBP16.59■□□□□ 0.25
NPHP4-205ENST00000466897 CCDC192P0DO97 292 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 GRM5P41594 1212 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 WDR5P61964 334 aaKnown RBP16.59■□□□□ 0.25
NPHP4-205ENST00000466897 TYRO3Q06418 890 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 PAK1Q13153 545 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 ECHDC2Q86YB7 292 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 ZC3H3Q8IXZ2 948 aaKnown RBP16.59■□□□□ 0.25
NPHP4-205ENST00000466897 ZBTB45Q96K62 511 aaPredicted RBP16.59■□□□□ 0.25
NPHP4-205ENST00000466897 FBXL18Q96ME1 805 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 TSG101Q99816 390 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 TCHPQ9BT92 498 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 HAPLN2Q9GZV7 340 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 IKZF4Q9H2S9 585 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 KIAA1586Q9HCI6 787 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 DMAC2Q9NW81 257 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 TMEM161AQ9NX61 479 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 RWDD2AQ9UIY3 292 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 AGO2Q9UKV8 859 aaKnown RBP16.59■□□□□ 0.25
NPHP4-205ENST00000466897 IPPQ9Y573 584 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 CEP290O15078 2479 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 GBF1Q92538 1859 aa16.59■□□□□ 0.25
NPHP4-205ENST00000466897 SYCE3A1L190 88 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 TISP43B9A030 160 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 AMHP03971 560 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 ATF7P17544 494 aaPredicted RBP16.58■□□□□ 0.24
NPHP4-205ENST00000466897 RPL13P26373 211 aaKnown RBP16.58■□□□□ 0.24
NPHP4-205ENST00000466897 TTI2Q6NXR4 508 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 OTOP2Q7RTS6 562 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 CDR2LQ86X02 465 aaPredicted RBP16.58■□□□□ 0.24
NPHP4-205ENST00000466897 NPAS4Q8IUM7 802 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 SMG8Q8ND04 991 aaKnown RBP16.58■□□□□ 0.24
NPHP4-205ENST00000466897 PHOSPHO2Q8TCD6 241 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 NELFBQ8WX92 580 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 PGBD4Q96DM1 585 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 CBWD1Q9BRT8 395 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 MSTO1Q9BUK6 570 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 UBN1Q9NPG3 1134 aa16.58■□□□□ 0.24
NPHP4-205ENST00000466897 INPPL1O15357 1258 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 CAVIN2O95810 425 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 NR3C1P04150 777 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 STAG3L1P0CL83 205 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 MATR3P43243 847 aaKnown RBP eCLIP16.57■□□□□ 0.24
NPHP4-205ENST00000466897 KCNJ6P48051 423 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 FKBP3Q00688 224 aaKnown RBP16.57■□□□□ 0.24
NPHP4-205ENST00000466897 ANKRD40Q6AI12 368 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 ZBTB33Q86T24 672 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 TOP1MTQ969P6 601 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 SLC9A7Q96T83 725 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 CCDC94Q9BW85 323 aaPredicted RBP16.57■□□□□ 0.24
NPHP4-205ENST00000466897 NXF3Q9H4D5 531 aaKnown RBP16.57■□□□□ 0.24
NPHP4-205ENST00000466897 HSPBP1Q9NZL4 362 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 PCDH10Q9P2E7 1040 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 CPSF3Q9UKF6 684 aaKnown RBP16.57■□□□□ 0.24
NPHP4-205ENST00000466897 CTNND2Q9UQB3 1225 aa16.57■□□□□ 0.24
NPHP4-205ENST00000466897 MAPK13O15264 365 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 HOXA2O43364 376 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 EXTL3O43909 919 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 ADRB2P07550 413 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 CLTAP09496 248 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 PMS1P54277 932 aaKnown RBP16.56■□□□□ 0.24
NPHP4-205ENST00000466897 KLHL10Q6JEL2 608 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.56■□□□□ 0.24
NPHP4-205ENST00000466897 GPD1LQ8N335 351 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 XXYLT1Q8NBI6 393 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms