RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 CDH7Q9ULB5 785 aa16.17■□□□□ 0.18
CXCR4-203ENST00000466288 SMG5Q9UPR3 1016 aaKnown RBP16.17■□□□□ 0.18
CXCR4-203ENST00000466288 IPPQ9Y573 584 aa16.17■□□□□ 0.18
CXCR4-203ENST00000466288 CCDC196A0A1B0GTZ2 297 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 DCDC2BA2VCK2 349 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 SRGAP2CP0DJJ0 459 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 SCNN1GP51170 649 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 USP41Q3LFD5 358 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 GRASPQ7Z6J2 395 aaPredicted RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 ZNF579Q8NAF0 562 aaKnown RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 ZFP42Q96MM3 310 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 RTKNQ9BST9 563 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 EIF2AQ9BY44 585 aaKnown RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 LTB4R2Q9NPC1 389 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 RPL17P18621 184 aaKnown RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 CD72P21854 359 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 MAGEA9P43362 315 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 NPEPPSP55786 919 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 PSMC5P62195 406 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 NTHL1P78549 312 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 LAMTOR4Q0VGL1 99 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 RNF20Q5VTR2 975 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 FUT10Q6P4F1 479 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 RSPO2Q6UXX9 243 aaPredicted RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 RASEFQ8IZ41 740 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 FGF13Q92913 245 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 SECISBP2LQ93073 1101 aaKnown RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 TMEM143Q96AN5 459 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 COLEC11Q9BWP8 271 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 NAP1L2Q9ULW6 460 aaPredicted RBP16.16■□□□□ 0.18
CXCR4-203ENST00000466288 HES2Q9Y543 173 aa16.16■□□□□ 0.18
CXCR4-203ENST00000466288 CYP3A7-CYP3A51PA0A087WV96 503 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 NR1I2O75469 434 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 TDP2O95551 362 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 ADRB1P08588 477 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 CYP3A7P24462 503 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 ST3GAL2Q16842 350 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 TSGA10IPQ3SY00 556 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 MTSS1LQ765P7 747 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 GSTCDQ8NEC7 633 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 ETNPPLQ8TBG4 499 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 TBCKQ8TEA7 893 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 PSPC1Q8WXF1 523 aaKnown RBP16.15■□□□□ 0.18
CXCR4-203ENST00000466288 SLC7A3Q8WY07 619 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 CLDN23Q96B33 292 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 DHX33Q9H6R0 707 aaKnown RBP16.15■□□□□ 0.18
CXCR4-203ENST00000466288 PARD6AQ9NPB6 346 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 FBXW11Q9UKB1 542 aa16.15■□□□□ 0.18
CXCR4-203ENST00000466288 PFKPQ01813 784 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 TSSK4Q6SA08 328 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 RNF149Q8NC42 400 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 CCDC148Q8NFR7 591 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 VPS54Q9P1Q0 977 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 ADAM28Q9UKQ2 775 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 USP18Q9UMW8 372 aa16.14■□□□□ 0.17
CXCR4-203ENST00000466288 EML1O00423 815 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 TBC1D4O60343 1298 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 TSPAN1O60635 241 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 HNRNPA1P09651 372 aaKnown RBP eCLIP16.13■□□□□ 0.17
CXCR4-203ENST00000466288 TARSP26639 723 aaKnown RBP16.13■□□□□ 0.17
CXCR4-203ENST00000466288 CREMQ03060 361 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 FZD5Q13467 585 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 NTRK3Q16288 839 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 RTP2Q5QGT7 225 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 ZBTB41Q5SVQ8 909 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 PRSS55Q6UWB4 352 aaPredicted RBP16.13■□□□□ 0.17
CXCR4-203ENST00000466288 ITFG1Q8TB96 612 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 CEP170P1Q96L14 293 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 PRMT8Q9NR22 394 aaPredicted RBP16.13■□□□□ 0.17
CXCR4-203ENST00000466288 WRAP73Q9P2S5 460 aaPredicted RBP16.13■□□□□ 0.17
CXCR4-203ENST00000466288 GIT1Q9Y2X7 761 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 NID2Q14112 1375 aa16.13■□□□□ 0.17
CXCR4-203ENST00000466288 CHD6Q8TD26 2715 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 AXLP30530 894 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 RPS9P46781 194 aaKnown RBP16.12■□□□□ 0.17
CXCR4-203ENST00000466288 QARSP47897 775 aaKnown RBP16.12■□□□□ 0.17
CXCR4-203ENST00000466288 NOTUMQ6P988 496 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 FERMT3Q86UX7 667 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 EXOC8Q8IYI6 725 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 RABGGTAQ92696 567 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 CCDC51Q96ER9 411 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 CPB2Q96IY4 423 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 KXD1Q9BQD3 176 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 CLSTN3Q9BQT9 956 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 PPME1Q9Y570 386 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 CHD8Q9HCK8 2581 aa16.12■□□□□ 0.17
CXCR4-203ENST00000466288 SHISA7A6NL88 538 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 ERLIN2O94905 339 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 C8AP07357 584 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 HOXA9P31269 272 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 RFC5P40937 340 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 AKAP17AQ02040 695 aaKnown RBP16.11■□□□□ 0.17
CXCR4-203ENST00000466288 PCBP1Q15365 356 aaKnown RBP eCLIP16.11■□□□□ 0.17
CXCR4-203ENST00000466288 NELL2Q99435 816 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 PHF20Q9BVI0 1012 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 APOL6Q9BWW8 343 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 RNF26Q9BY78 433 aaPredicted RBP16.11■□□□□ 0.17
CXCR4-203ENST00000466288 CSRNP2Q9H175 543 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 NXF3Q9H4D5 531 aaKnown RBP16.11■□□□□ 0.17
CXCR4-203ENST00000466288 BMP2KQ9NSY1 1161 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms