RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	GOLGA8S	H3BPF8	625 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	PFDN6	O15212	129 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	FTL	P02792	175 aa	Predicted RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	C6orf222	P0C671	652 aa	Predicted RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	CYP2B6	P20813	491 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	EIF3B	P55884	814 aa	Known RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	FAM71B	Q8TC56	605 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	KRT12	Q99456	494 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	SLITRK6	Q9H5Y7	841 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ANAPC7	Q9UJX3	599 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	CASZ1	Q86V15	1759 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ADM5	C9JUS6	153 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	FZD9	O00144	591 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	IFNB1	P01574	187 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	CTNNA1	P35221	906 aa	Known RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	NPTX2	P47972	431 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004		Q3C1V9	767 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	KRT71	Q3SY84	523 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	C6orf163	Q5TEZ5	329 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	CPLX4	Q7Z7G2	160 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	NT5DC4	Q86YG4	428 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ZNF564	Q8TBZ8	553 aa	Predicted RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	HPS3	Q969F9	1004 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	NIF3L1	Q9GZT8	377 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	BLOC1S4	Q9NUP1	217 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	FAM187A	A6NFU0	413 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	LRRC10B	A6NIK2	292 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004		H7C0C1	242 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	PALM	O75781	387 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	FTCD	O95954	541 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	PSMA2	P25787	234 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ATP5O	P48047	213 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ALS2CL	Q60I27	953 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	SLC30A10	Q6XR72	485 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	RHOT1	Q8IXI2	618 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	PALM2	Q8IXS6	379 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	RNF139	Q8WU17	664 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	SCFD1	Q8WVM8	642 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	KCNK9	Q9NPC2	374 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	CYP39A1	Q9NYL5	469 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ENC1	O14682	589 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	HEXIM1	O94992	359 aa	Known RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	GYPC	P04921	128 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	TMEM253	P0C7T8	217 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	MDM2	Q00987	491 aa	Predicted RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	GUCY2D	Q02846	1103 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	ARID5B	Q14865	1188 aa		12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	COL2A1	P02458	1487 aa	Predicted RBP	12.57	□□□□□ -0.4
RBM39-223	ENST00000463004	C17orf102	A2RUQ5	167 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	RGS16	O15492	202 aa	Predicted RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	ZFX	P17010	805 aa	Predicted RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	AXL	P30530	894 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	FXR1	P51114	621 aa	Known RBP eCLIP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	GFPT1	Q06210	699 aa	Predicted RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	NCAPH	Q15003	741 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	MPZL3	Q6UWV2	235 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	SCARA5	Q6ZMJ2	495 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	TRIM59	Q8IWR1	403 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	MTMR8	Q96EF0	704 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	TMEM51	Q9NW97	253 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	SV2C	Q496J9	727 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	RNF187	Q5TA31	235 aa	Predicted RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	PCGF5	Q86SE9	256 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	KCTD6	Q8NC69	237 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	CDKL2	Q92772	493 aa		12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	UBQLN1	Q9UMX0	589 aa	Known RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	PIN4	Q9Y237	131 aa	Known RBP	12.56	□□□□□ -0.4
RBM39-223	ENST00000463004	HLA-DRA	P01903	254 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	CD44	P16070	742 aa	Known RBP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	CHRNA3	P32297	505 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	ZNF410	Q86VK4	478 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	AFAP1L2	Q8N4X5	818 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	SEMA6B	Q9H3T3	888 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	EHD2	Q9NZN4	543 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	SDC4	P31431	198 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	ATIC	P31939	592 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	ACADSB	P45954	432 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	SLC12A3	P55017	1021 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	COG7	P83436	770 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	SYDE1	Q6ZW31	735 aa	Predicted RBP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	MSL3	Q8N5Y2	521 aa	Known RBP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	CCDC63	Q8NA47	563 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	ARRDC4	Q8NCT1	418 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	GLT1D1	Q96MS3	346 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	TMEM134	Q9H6X4	195 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	LRRD1	A4D1F6	860 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	TBC1D8	O95759	1140 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	SETDB1	Q15047	1291 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	TAF2	Q6P1X5	1199 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	ZNF384	Q8TF68	577 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	CGRRF1	Q99675	332 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.55	□□□□□ -0.4	4e-15	■■■□□ 15.3
RBM39-223	ENST00000463004	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	IPO11	Q9UI26	975 aa	Known RBP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	TARSL2	A2RTX5	802 aa	Known RBP	12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	EVI5	O60447	810 aa		12.55	□□□□□ -0.4
RBM39-223	ENST00000463004	HAS1	Q92839	578 aa		12.55	□□□□□ -0.4

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