RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 PICALMQ13492 652 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 SF1Q15637 639 aaKnown RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 PLEKHN1Q494U1 663 aaPredicted RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 GPR142Q7Z601 462 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 TEX2Q8IWB9 1127 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 ZFPM1Q8IX07 1006 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 ALG3Q92685 438 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 COPS5Q92905 334 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 TSR2Q969E8 191 aaKnown RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 TIFAQ96CG3 184 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 TRMT2BQ96GJ1 504 aaKnown RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 CDC6Q99741 560 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 PAGR1Q9BTK6 254 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 AP5M1Q9H0R1 490 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 DHX36Q9H2U1 1008 aaKnown RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 TTYH1Q9H313 450 aaPredicted RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 PFDN2Q9UHV9 154 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 HERC5Q9UII4 1024 aaKnown RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 COA3Q9Y2R0 106 aaPredicted RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 RABGAP1Q9Y3P9 1069 aa7.1□□□□□ -1.27
USP49-205ENST00000448078 TIMM13Q9Y5L4 95 aaPredicted RBP7.1□□□□□ -1.27
USP49-205ENST00000448078 UTYO14607 1347 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 HRKO00198 91 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 PDPK1O15530 556 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 PRODHO43272 600 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 BAG3O95817 575 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 PFKLP17858 780 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 MAPKAPK2P49137 400 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 PRR5P85299 388 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 FPGSQ05932 587 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 ZNF385BQ569K4 471 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 TMEM31Q5JXX7 168 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 EPHA10Q5JZY3 1008 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 C9orf50Q5SZB4 431 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 GJC2Q5T442 439 aaPredicted RBP7.09□□□□□ -1.27
USP49-205ENST00000448078 USP53Q70EK8 1073 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 RNF180Q86T96 592 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 FOXP4Q8IVH2 680 aaPredicted RBP7.09□□□□□ -1.27
USP49-205ENST00000448078 LRRC56Q8IYG6 542 aaPredicted RBP7.09□□□□□ -1.27
USP49-205ENST00000448078 PEX11GQ96HA9 241 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 MMP19Q99542 508 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 AARSD1Q9BTE6 412 aaKnown RBP7.09□□□□□ -1.27
USP49-205ENST00000448078 PI4KBQ9UBF8 816 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 ABCF2Q9UG63 623 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 RAPGEFL1Q9UHV5 662 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 PCDHA2Q9Y5H9 948 aa7.09□□□□□ -1.27
USP49-205ENST00000448078 IL16Q14005 1332 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 SALL1Q9NSC2 1324 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 MYH3P11055 1940 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 TRAV20A0A0B4J274 112 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 A0A1W2PQU0 124 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 DDTLA6NHG4 134 aaPredicted RBP7.08□□□□□ -1.28
USP49-205ENST00000448078 C22orf46C9J442 243 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 CLTBP09497 229 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 ADCYAP1R1P41586 468 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 USP14P54578 494 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 LINC00310P59036 64 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 YBX1P67809 324 aaKnown RBP7.08□□□□□ -1.28
USP49-205ENST00000448078 TLE2Q04725 743 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 RAB30Q15771 203 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 LRRC24Q50LG9 513 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 E4F1Q66K89 784 aaPredicted RBP7.08□□□□□ -1.28
USP49-205ENST00000448078 WWC2Q6AWC2 1192 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 CEP68Q76N32 757 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 TMEM145Q8NBT3 493 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 ST13P5Q8NFI4 369 aaPredicted RBP7.08□□□□□ -1.28
USP49-205ENST00000448078 FRS2Q8WU20 508 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 MZB1Q8WU39 189 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 USP6NLQ92738 828 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 TMEM169Q96HH4 297 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 SIGLEC10Q96LC7 697 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 YIPF4Q9BSR8 244 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 IRF2BPLQ9H1B7 796 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.08□□□□□ -1.28
USP49-205ENST00000448078 SIRPGQ9P1W8 387 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 RBPJLQ9UBG7 517 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 MBD1Q9UIS9 605 aaPredicted RBP7.08□□□□□ -1.28
USP49-205ENST00000448078 KCTD3Q9Y597 815 aa7.08□□□□□ -1.28
USP49-205ENST00000448078 EYA2O00167 538 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SEPT4O43236 478 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 NTRK1P04629 796 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 APPP05067 770 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 HOXC6P09630 235 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 PRDX5P30044 214 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 LTBRP36941 435 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 BCL6P41182 706 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 GRIA2P42262 883 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 BTDP43251 543 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 EPHB3P54753 998 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 GFRA1P56159 465 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SSRP1Q08945 709 aaKnown RBP7.07□□□□□ -1.28
USP49-205ENST00000448078 PPIGQ13427 754 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP49-205ENST00000448078 TARBP2Q15633 366 aaKnown RBP7.07□□□□□ -1.28
USP49-205ENST00000448078 CCL14Q16627 93 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 ATP2B3Q16720 1220 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 INF2Q27J81 1249 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 TRIM60Q495X7 471 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 GORABQ5T7V8 394 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 NSMFQ6X4W1 530 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 DCP2Q8IU60 420 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms