RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 DHRS13Q6UX07 377 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 Q71RC1 249 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PTF1AQ7RTS3 328 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SRBD1Q8N5C6 995 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 NEK9Q8TD19 979 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PRPF31Q8WWY3 499 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ING5Q8WYH8 240 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC17Q96LX7 622 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CMKLR1Q99788 373 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MED10Q9BTT4 135 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 FOXQ1Q9C009 403 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ZDHHC5Q9C0B5 715 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC52A2Q9HAB3 445 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PCDHA8Q9Y5H6 950 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ZFP37Q9Y6Q3 630 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 RP1P56715 2156 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 FLRT2O43155 660 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SART1O43290 800 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 LRRN2O75325 713 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PGK2P07205 417 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 RHOP08100 348 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SRFP11831 508 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 XRCC5P13010 732 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 AMD1P17707 334 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PLCB2Q00722 1185 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 LONRF1Q17RB8 773 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MGAT5BQ3V5L5 792 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 IQCCQ4KMZ1 466 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 KRT40Q6A162 431 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC70Q6NSX1 233 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 LURAP1LQ8IV03 231 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 STKLD1Q8NE28 680 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 RUFY2Q8WXA3 655 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MARVELD3Q96A59 401 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TBC1D32Q96NH3 1257 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CCNL2Q96S94 520 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SEPT5Q99719 369 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SLF1Q9BQI6 1058 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PLVAPQ9BX97 442 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 NAPBQ9H115 298 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 NDST4Q9H3R1 872 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 FANCEQ9HB96 536 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ZSWIM6Q9HCJ5 1215 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PTTG2Q9NZH5 202 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 LNPEPQ9UIQ6 1025 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 DIP2CQ9Y2E4 1556 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ADGRL2O95490 1459 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SUPT6HQ7KZ85 1726 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 HEATR9A2RTY3 570 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 BTBD17A6NE02 478 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 PHF20L1A8MW92 1017 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 PROM1O43490 865 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 B4GAT1O43505 415 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF217O75362 1048 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TAF5LO75529 589 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 BAG4O95429 457 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 NFATC1O95644 943 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ASMTLO95671 621 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 UBTFL1P0CB47 393 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 EIF2S3P41091 472 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 GARSP41250 739 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 BTDP43251 543 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 GABREP78334 506 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 UBE3AQ05086 875 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TROAPQ12815 778 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 NFIAQ12857 509 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIP10Q15642 601 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 BMT2Q1RMZ1 405 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 NRN1LQ496H8 165 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CTXN3Q4LDR2 81 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ARHGAP29Q52LW3 1261 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 RASGRP3Q8IV61 690 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC105Q8IYK2 499 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TEX29Q8N6K0 151 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 GIMAP8Q8ND71 665 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 WDR48Q8TAF3 677 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TGFBRAP1Q8WUH2 860 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SGCDQ92629 289 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 LRRC45Q96CN5 670 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SGSM3Q96HU1 749 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC136Q96JN2 1154 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 OSBPL5Q9H0X9 879 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 SMOC2Q9H3U7 446 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CYLDQ9NQC7 956 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF302Q9NR11 478 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 NDOR1Q9UHB4 597 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 POU2F3Q9UKI9 436 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 RHPN2P1A8MT19 583 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 FOXO6A8MYZ6 492 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 IPO8O15397 1037 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 GNAI3P08754 354 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SP9P0CG40 484 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 THEGLP0DJG4 465 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SEC13P55735 322 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 OC90Q02509 493 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 GRIN1Q05586 938 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ITPK1Q13572 414 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 LAMC2Q13753 1193 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TOMM20Q15388 145 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms