RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 DYDC2Q96IM9 177 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 BTBD6Q96KE9 485 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 RAB34Q9BZG1 259 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 GCNT4Q9P109 453 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 ENTPD3O75355 529 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 DDNO94850 711 aaPredicted RBP13.88□□□□□ -0.19
PTPRN-202ENST00000409251 XRCC5P13010 732 aaKnown RBP13.88□□□□□ -0.19
PTPRN-202ENST00000409251 HMGB2P26583 209 aaKnown RBP13.88□□□□□ -0.19
PTPRN-202ENST00000409251 TUBP50607 506 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 TMED2Q15363 201 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 LRRC36Q1X8D7 754 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 WDR78Q5VTH9 848 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 CENPPQ6IPU0 288 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 SCYL3Q8IZE3 742 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 TRPM4Q8TD43 1214 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 C1orf54Q8WWF1 131 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 SPOCK2Q92563 424 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 PITPNM3Q9BZ71 974 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 BHMT2Q9H2M3 363 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 ZHX2Q9Y6X8 837 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 SSU72P8A0A1W2PR75 194 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 HMGCS2P54868 508 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 ZBTB16Q05516 673 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 MKRN3Q13064 507 aaKnown RBP13.88□□□□□ -0.19
PTPRN-202ENST00000409251 TTLL12Q14166 644 aaPredicted RBP13.88□□□□□ -0.19
PTPRN-202ENST00000409251 RCN2Q14257 317 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 AGBL2Q5U5Z8 902 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 JAMLQ86YT9 394 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 FITM2Q8N6M3 262 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 DAGLBQ8NCG7 672 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 TPCN2Q8NHX9 752 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 TTC8Q8TAM2 541 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 CNKSR2Q8WXI2 1034 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 PBKQ96KB5 322 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 PPFIA2O75334 1257 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 CAP2P40123 477 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 MARCKSL1P49006 195 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 CYP2J2P51589 502 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 KYNUQ16719 465 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 LDHDQ86WU2 507 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 MREGQ8N565 214 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 C9orf72Q96LT7 481 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 ZNF408Q9H9D4 720 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 C2CD2Q9Y426 696 aa13.88□□□□□ -0.19
PTPRN-202ENST00000409251 COL4A5P29400 1685 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 RARAP10276 462 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 UCHL3P15374 230 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 UNC13DQ70J99 1090 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 RPUSD2Q8IZ73 545 aaKnown RBP13.87□□□□□ -0.19
PTPRN-202ENST00000409251 SLC35G2Q8TBE7 412 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 CCSER1Q9C0I3 900 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 BATF3Q9NR55 127 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 ADAM22Q9P0K1 906 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 ZNF541Q9H0D2 1346 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 THAP12O43422 761 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 NOL4O94818 638 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 GCNT3O95395 438 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 BAG2O95816 211 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 TNFAIP3P21580 790 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 CCND1P24385 295 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 EPHB2P29323 1055 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 ABL2P42684 1182 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 RWDD2BP57060 319 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 MOB2Q70IA6 237 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 PRUNE1Q86TP1 453 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 DCAF4Q8WV16 495 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 MTMR9Q96QG7 549 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 GMLQ99445 158 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 EMILIN3Q9NT22 766 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 GGA3Q9NZ52 723 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 CNTNAP1P78357 1384 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 EML1O00423 815 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 MAP3K13O43283 966 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 SNX3O60493 162 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 ETS2P15036 469 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 KRT15P19012 456 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 LAMB3Q13751 1172 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 TSNAXIP1Q2TAA8 658 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 CUEDC2Q9H467 287 aa13.87□□□□□ -0.19
PTPRN-202ENST00000409251 TESPA1A2RU30 521 aaPredicted RBP13.86□□□□□ -0.19
PTPRN-202ENST00000409251 PABPC3Q9H361 631 aaKnown RBP13.86□□□□□ -0.19
PTPRN-202ENST00000409251 SMNDC1O75940 238 aaKnown RBP eCLIP13.86□□□□□ -0.19
PTPRN-202ENST00000409251 PLA2G4BP0C869 781 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 ARP10275 920 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 DLATP10515 647 aaKnown RBP13.86□□□□□ -0.19
PTPRN-202ENST00000409251 STAT1P42224 750 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 CASP4P49662 377 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 UCMAQ8WVF2 138 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 ERP44Q9BS26 406 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 SLCO1B3Q9NPD5 702 aa13.86□□□□□ -0.19
PTPRN-202ENST00000409251 CFAP73A6NFT4 308 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 LINGO3P0C6S8 592 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 TRIM49P0CI25 452 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 TRIM49CP0CI26 452 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 CPA2P48052 419 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 SERPINB4P48594 390 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 CDK17Q00537 523 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 OVGP1Q12889 678 aa13.85□□□□□ -0.19
PTPRN-202ENST00000409251 MDH1BQ5I0G3 518 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms