RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KNOP1Q1ED39 458 aaKnown RBP32.1■■■□□ 2.73
USP42-202ENST00000404008 CCDC183Q5T5S1 534 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 HERC6Q8IVU3 1022 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 GUF1Q8N442 669 aaKnown RBP32.1■■■□□ 2.73
USP42-202ENST00000404008 GBP3Q9H0R5 595 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 NXF3Q9H4D5 531 aaKnown RBP32.1■■■□□ 2.73
USP42-202ENST00000404008 LRFN2Q9ULH4 789 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 HES2Q9Y543 173 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 COL4A6Q14031 1691 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 FNDC1Q4ZHG4 1894 aaPredicted RBP32.1■■■□□ 2.73
USP42-202ENST00000404008 KIF20AO95235 890 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 BMP6P22004 513 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 COBLL1Q53SF7 1204 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 RBM43Q6ZSC3 357 aaKnown RBP32.09■■■□□ 2.73
USP42-202ENST00000404008 TRIML1Q8N9V2 468 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 RNF169Q8NCN4 708 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 TMEM63CQ9P1W3 806 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 MAPK8IP1Q9UQF2 711 aa32.09■■■□□ 2.73
USP42-202ENST00000404008 A0A0B4J269 797 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 TGFB1I1O43294 461 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 GJB5O95377 273 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 ADSSP30520 456 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 MATR3P43243 847 aaKnown RBP eCLIP32.08■■■□□ 2.73
USP42-202ENST00000404008 NFKBIBQ15653 356 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 FAM109BQ6ICB4 259 aaPredicted RBP32.08■■■□□ 2.73
USP42-202ENST00000404008 SLFN12LQ6IEE8 588 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 LPPQ93052 612 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 PGBD4Q96DM1 585 aa32.08■■■□□ 2.73
USP42-202ENST00000404008 MEIS3P2A8K0S8 358 aa32.07■■■□□ 2.73
USP42-202ENST00000404008 HARSP12081 509 aaKnown RBP32.07■■■□□ 2.73
USP42-202ENST00000404008 FAM117BQ6P1L5 589 aa32.07■■■□□ 2.73
USP42-202ENST00000404008 RNF39Q9H2S5 420 aa32.07■■■□□ 2.73
USP42-202ENST00000404008 KCTD10Q9H3F6 313 aa32.07■■■□□ 2.73
USP42-202ENST00000404008 PRCPP42785 496 aa32.07■■■□□ 2.72
USP42-202ENST00000404008 AGMOQ6ZNB7 445 aa32.07■■■□□ 2.72
USP42-202ENST00000404008 HACE1Q8IYU2 909 aa32.07■■■□□ 2.72
USP42-202ENST00000404008 RNF19AQ9NV58 838 aa32.07■■■□□ 2.72
USP42-202ENST00000404008 FAM189A1O60320 539 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 DGKIO75912 1065 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 FGFR1P11362 822 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 ITGA4P13612 1032 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 GARTP22102 1010 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 GRM5P41594 1212 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 SNRPFP62306 86 aaKnown RBP32.06■■■□□ 2.72
USP42-202ENST00000404008 CAVIN1Q6NZI2 390 aaKnown RBP32.06■■■□□ 2.72
USP42-202ENST00000404008 CEP120Q8N960 986 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 POMGNT1Q8WZA1 660 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 MSTO1Q9BUK6 570 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 AGPAT3Q9NRZ7 376 aa32.06■■■□□ 2.72
USP42-202ENST00000404008 CITO14578 2027 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 GRXCR1A8MXD5 290 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 HS2ST1Q7LGA3 356 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 ADSSL1Q8N142 457 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 SYAP1Q96A49 352 aaPredicted RBP32.05■■■□□ 2.72
USP42-202ENST00000404008 ZBED2Q9BTP6 218 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 APOL6Q9BWW8 343 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 RC3H2Q9HBD1 1191 aaKnown RBP32.05■■■□□ 2.72
USP42-202ENST00000404008 TYW1Q9NV66 732 aaKnown RBP32.05■■■□□ 2.72
USP42-202ENST00000404008 SNTG2Q9NY99 539 aa32.05■■■□□ 2.72
USP42-202ENST00000404008 CGNQ9P2M7 1197 aaKnown RBP32.05■■■□□ 2.72
USP42-202ENST00000404008 RALGAPA2Q2PPJ7 1873 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 HSFX4A0A1B0GTS1 333 aaPredicted RBP32.04■■■□□ 2.72
USP42-202ENST00000404008 HSFX3A0A1B0GWH4 333 aaPredicted RBP32.04■■■□□ 2.72
USP42-202ENST00000404008 OGTO15294 1046 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 HOXA2O43364 376 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 AKAP5P24588 427 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 HTRA4P83105 476 aaPredicted RBP32.04■■■□□ 2.72
USP42-202ENST00000404008 SKOR2Q2VWA4 1001 aaPredicted RBP32.04■■■□□ 2.72
USP42-202ENST00000404008 CLLU1OSQ5K130 101 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 THNSL1Q8IYQ7 743 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 ZNF689Q96CS4 500 aaPredicted RBP32.04■■■□□ 2.72
USP42-202ENST00000404008 CBWD1Q9BRT8 395 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 UBN1Q9NPG3 1134 aa32.04■■■□□ 2.72
USP42-202ENST00000404008 AGO2Q9UKV8 859 aaKnown RBP32.04■■■□□ 2.72
USP42-202ENST00000404008 PDXKO00764 312 aa32.03■■■□□ 2.72
USP42-202ENST00000404008 GATMP50440 423 aa32.03■■■□□ 2.72
USP42-202ENST00000404008 ARMCX5Q6P1M9 558 aa32.03■■■□□ 2.72
USP42-202ENST00000404008 TMEM192Q8IY95 271 aa32.03■■■□□ 2.72
USP42-202ENST00000404008 GOLGA5Q8TBA6 731 aa32.03■■■□□ 2.72
USP42-202ENST00000404008 RSAD1Q9HA92 442 aa32.03■■■□□ 2.72
USP42-202ENST00000404008 TLL1O43897 1013 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 RECQL4O94761 1208 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 CD44P16070 742 aaKnown RBP32.02■■■□□ 2.72
USP42-202ENST00000404008 RABGGTBP53611 331 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 OSTNP61366 133 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 SEZ6Q53EL9 994 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 HELQQ8TDG4 1101 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 YME1L1Q96TA2 773 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 RAD9AQ99638 391 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 CCDC94Q9BW85 323 aaPredicted RBP32.02■■■□□ 2.72
USP42-202ENST00000404008 GIT1Q9Y2X7 761 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 INSL6Q9Y581 213 aa32.02■■■□□ 2.72
USP42-202ENST00000404008 TRIP11Q15643 1979 aa32.01■■■□□ 2.72
USP42-202ENST00000404008 TDRD15B5MCY1 1934 aaKnown RBP32.01■■■□□ 2.71
USP42-202ENST00000404008 CHD9Q3L8U1 2897 aa32.01■■■□□ 2.71
USP42-202ENST00000404008 PPP1R3GB7ZBB8 358 aa32.01■■■□□ 2.71
USP42-202ENST00000404008 PPP1R2P41236 205 aa32.01■■■□□ 2.71
USP42-202ENST00000404008 STIM1Q13586 685 aa32.01■■■□□ 2.71
USP42-202ENST00000404008 KYAT1Q16773 422 aa32.01■■■□□ 2.71
USP42-202ENST00000404008 ZBTB41Q5SVQ8 909 aa32.01■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms