RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 COA1Q9GZY4 146 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 CYP4F11Q9HBI6 524 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 HPSEQ9Y251 543 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ZBBXA8MT70 800 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 IGF2BP3O00425 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 P4HBP07237 508 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 KCNA3P22001 575 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 OSTNP61366 133 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ARL13BQ3SXY8 428 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ZNF394Q53GI3 561 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 RCSD1Q6JBY9 416 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 APLFQ8IW19 511 aaPredicted RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 NEDD1Q8NHV4 660 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 PRPF31Q8WWY3 499 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 RBM15Q96T37 977 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 VCPKMTQ9H867 229 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 GEMIN8Q9NWZ8 242 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SLC9A2Q9UBY0 812 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 HEY1Q9Y5J3 304 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 CLRN2A0PK11 232 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 SERPINB2P05120 415 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 TMEM253P0C7T8 217 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 SCP2P22307 547 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 KLK7P49862 253 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 MTMR1Q13613 665 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 SLC12A1Q13621 1099 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 ITIH4Q14624 930 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 CRYMQ14894 314 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 SUN2Q9UH99 717 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 INO80Q9ULG1 1556 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 RFX8Q6ZV50 586 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 RIBC1Q8N443 379 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 SLC5A4Q9NY91 659 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 DENND3A2RUS2 1198 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 KLRC1P26715 233 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 RABGAP1LQ5R372 815 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 MOV10L1Q9BXT6 1211 aaKnown RBP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 ING2Q9H160 280 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 NPHS2Q9NP85 383 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 PSMC3IPQ9P2W1 217 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 PLAGL2Q9UPG8 496 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 MYMKA6NI61 221 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 CUL3Q13618 768 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 DAB2IPQ5VWQ8 1189 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 ARHGAP27Q6ZUM4 889 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 ARMCX2Q7L311 632 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 DDX42Q86XP3 938 aaKnown RBP eCLIP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 COL23A1Q86Y22 540 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 CNPY4Q8N129 248 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 DTX3LQ8TDB6 740 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 APOL6Q9BWW8 343 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 ANKZF1Q9H8Y5 726 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 WARS2Q9UGM6 360 aaKnown RBP13.62□□□□□ -0.23
COL3A1-201ENST00000304636 L3MBTL1Q9Y468 752 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 TMEM94Q12767 1356 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 RNF103-CHMP3A0A140T963 221 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 PI4K2BG5E9Z4 385 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 KIF22Q14807 665 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 RHPN2Q8IUC4 686 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 RCOR2Q8IZ40 523 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 NLGN1Q8N2Q7 840 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 CASKIN2Q8WXE0 1202 aa13.62□□□□□ -0.23
COL3A1-201ENST00000304636 PPP1R12AO14974 1030 aaPredicted RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 CLDN3O15551 220 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 MYLK4Q86YV6 388 aaPredicted RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 KIF2BQ8N4N8 673 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 SCG3Q8WXD2 468 aaKnown RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 ADA2Q9NZK5 511 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 CYP26A1O43174 497 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 ENO1P06733 434 aaKnown RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 ZNF699Q32M78 642 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 P3H1Q32P28 736 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 CYFIP1Q7L576 1253 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 TUFT1Q9NNX1 390 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 UBN1Q9NPG3 1134 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 PRDM4Q9UKN5 801 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 ABL1P00519 1130 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 QARSP47897 775 aaKnown RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 CDK17Q00537 523 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 KRT76Q01546 638 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 KDSRQ06136 332 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 QRICH1Q2TAL8 776 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 RPS6KC1Q96S38 1066 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 MAP3K14Q99558 947 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 POLR3CQ9BUI4 534 aaPredicted RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 KLHL8Q9P2G9 620 aaPredicted RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 FMO5P49326 533 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 EFTUD2Q15029 972 aaKnown RBP eCLIP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 CDKL3Q8IVW4 592 aaPredicted RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 RNF169Q8NCN4 708 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 DBNDD1Q9H9R9 158 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 SPC25Q9HBM1 224 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 GTSE1Q9NYZ3 720 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 MTO1Q9Y2Z2 717 aaKnown RBP13.61□□□□□ -0.23
COL3A1-201ENST00000304636 SNX5Q9Y5X3 404 aa13.61□□□□□ -0.23
COL3A1-201ENST00000304636 GRIN1Q05586 938 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 KCTD2Q14681 263 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 C12orf60Q5U649 245 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 CEP19Q96LK0 163 aa13.6□□□□□ -0.23
COL3A1-201ENST00000304636 TMBIM4Q9HC24 238 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms