RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 COMTP21964 271 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 POLD1P28340 1107 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 CCNFP41002 786 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 FXR2P51116 673 aaKnown RBP eCLIP14.42□□□□□ -0.1
SKA3-201ENST00000298260 EIF6P56537 245 aaKnown RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 ACSBG2Q5FVE4 666 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 MTDHQ86UE4 582 aaKnown RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 SFR1Q86XK3 245 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 AGGF1Q8N302 714 aaeCLIP14.42□□□□□ -0.1
SKA3-201ENST00000298260 WDR60Q8WVS4 1066 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 MAGEB18Q96M61 343 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 TMEM109Q9BVC6 243 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 VCXQ9H320 206 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.42□□□□□ -0.1
SKA3-201ENST00000298260 A0A0A6YYK5 440 aaPredicted RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 THAP12O43422 761 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 TRIM49P0CI25 452 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 TRIM49CP0CI26 452 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 CYP11B2P19099 503 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 GNA11P29992 359 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 CHRNA3P32297 505 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 COILP38432 576 aaPredicted RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 CALCOCO2Q13137 446 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 PABPC4Q13310 644 aaKnown RBP eCLIP14.42□□□□□ -0.16e-8■□□□□ 9.5
SKA3-201ENST00000298260 RASIP1Q5U651 963 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 ISLR2Q6UXK2 745 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 NSMFQ6X4W1 530 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 DGKHQ86XP1 1220 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 ENDOVQ8N8Q3 282 aaKnown RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 ZFAND2BQ8WV99 257 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 NDNQ99608 321 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 MOV10L1Q9BXT6 1211 aaKnown RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 PREBQ9HCU5 417 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 USP17L5A8MUK1 530 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 RASA4BC9J798 803 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 CLDN3O15551 220 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 RASA4O43374 803 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 GNA14O95837 355 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 DRG2P55039 364 aaKnown RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 MARSP56192 900 aaKnown RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 MCL1Q07820 350 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 ITPK1Q13572 414 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 GIT2Q14161 759 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 HHATQ5VTY9 493 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 CCDC65Q8IXS2 484 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 UBN1Q9NPG3 1134 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 BMP2KQ9NSY1 1161 aaPredicted RBP14.42□□□□□ -0.1
SKA3-201ENST00000298260 DNAJC12Q9UKB3 198 aa14.42□□□□□ -0.1
SKA3-201ENST00000298260 C2orf71A6NGG8 1288 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 KRT17Q04695 432 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 PLEKHG4Q58EX7 1191 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 DAB2IPQ5VWQ8 1189 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 GALNT17Q6IS24 598 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 SLC30A10Q6XR72 485 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 EPM2AIP1Q7L775 607 aaPredicted RBP14.41□□□□□ -0.1
SKA3-201ENST00000298260 RDH13Q8NBN7 331 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 TGFBRAP1Q8WUH2 860 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 ELMO3Q96BJ8 720 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 DYDC2Q96IM9 177 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 CADM1Q9BY67 442 aaKnown RBP14.41□□□□□ -0.1
SKA3-201ENST00000298260 ALG13Q9NP73 1137 aaKnown RBP14.41□□□□□ -0.1
SKA3-201ENST00000298260 NPHS2Q9NP85 383 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 USP20Q9Y2K6 914 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 DLEC1Q9Y238 1755 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 COL22A1Q8NFW1 1626 aaPredicted RBP14.41□□□□□ -0.1
SKA3-201ENST00000298260 A0A1B0GUL6 1792 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 A0A1W2PRG0 241 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 TJP3O95049 919 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 TMEM253P0C7T8 217 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 SKIV2L2P42285 1042 aaKnown RBP14.41□□□□□ -0.1
SKA3-201ENST00000298260 COG2Q14746 738 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 IRGCQ6NXR0 463 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 C4orf50Q6ZRC1 276 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 PHLDB2Q86SQ0 1253 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 GBP5Q96PP8 586 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 CHST7Q9NS84 486 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 PCYOX1Q9UHG3 505 aa14.41□□□□□ -0.1
SKA3-201ENST00000298260 BCL9O00512 1426 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 ITGB4P16144 1822 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 CYP19A1P11511 503 aaPredicted RBP14.4□□□□□ -0.1
SKA3-201ENST00000298260 TNFAIP3P21580 790 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 SOX5P35711 763 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 ZNF34Q8IZ26 560 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 ZNF444Q8N0Y2 327 aaPredicted RBP14.4□□□□□ -0.1
SKA3-201ENST00000298260 KLHL23Q8NBE8 558 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 SERPINB12Q96P63 405 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 DDX25Q9UHL0 483 aaKnown RBP14.4□□□□□ -0.1
SKA3-201ENST00000298260 PCDHA12Q9UN75 941 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 UBR2Q8IWV8 1755 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 CFAP69A5D8W1 941 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 MAPK13O15264 365 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 MED24O75448 989 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 FTLP02792 175 aaPredicted RBP14.4□□□□□ -0.1
SKA3-201ENST00000298260 CTNNA2P26232 953 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 VHLP40337 213 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 CPA2P48052 419 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 ITGA8P53708 1063 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 INHBCP55103 352 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 NPEPPSP55786 919 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 TMEM62Q0P6H9 643 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms